Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0472 ATGAACAACTACAACAAGCTCCATTCCTCCGTCTCCGGCGACACGCCGACCACCTCCGAACTTTCCCACGATCCCAATCGCGGCCCCTCGCTGCCTCCTCCGCTGTCGTCCACCTCACGCCGCCGCACCCGAATCCTCTTCATCTCCCTCCTCTCCATCCTCCTCATCACGGCCTCAGCCGTGTCCGCCGCCGTCCTGATCCGCTCCCACATCGGTGGCGCCACCTCCTCCGAAGCCCATTTCCCTCACAACAAACCCAGCCAAGCCATCTCCCGCGCCTGCAGCCTGACTCTCTACCCTTCCCTCTGCCTCTCCTCCCTTCTCTCCTTCCCCGGCTCCCTCTCCGCCGACGTCCACGACCTCGTTCACATCACTCTCAACCTCACGCTCCAGCATCTCAACAAAGCTCTCTATTCCTCTTCTCAAATCCCCATCTCCCAATTCTCTAATAATCCACTCGCTCATTCCGCTTATGAAGACTGTATGGAGCTCCTAAACGACGCCGTCGACGCCTTCTCCCTCTCTCTCTTCTCCCCCGCCGCCTCCAACCACGACGTCGTGACGTGGCTCAGCGCGGCGTTGACTTATCATGACACGTGTATGGACGGATTTGCGGATGTGGCTGACCCTGTCAAGGATCAGATGGCCGCGAAGCTCAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCGATTTTTTCTGGGTTTGGTGGGGGGTTGCCGGTGCAGAACAGGCGGCGGCGGCGGTTGATGGACAGTGGAAGTGAGTGGGCGGCGGAGAATGGTGTAACGGAGGGAGAGTTTCCTGAGTGGGTCAGTGGGAAGGATCGCCGGCTTTTGGCTACTCCCATTTCCGCGATTCAGGCGGATATTGTGGTGGCGAAAGATGGGAGTGGGAAGTTTAAGACGGTGGCGGAGGCCATTGCGGCGGCGCCGTCGTCAAGTGGTCGACGGATCGTCATCTACATTAAGGCTGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGCAAAAGCATTTTTGACAAAGTTACCACTTTTCGCACGGCTACCTTTGCGGGTTCTGGGACAGGAATAATTCTACGAGACATGACGTTCGAGAACACGGCGGGGCCGAGCAAGCACCAAGCAGTGGCCCTACGGTTGAGCGCGGACCACGCGGTGGTATACCATTGCAACATCATCGGCTATCAAGACACACTGTACGTGCACTCGAACCGACAGTTCTTTCGGGAGTGCGACATATACGGAACGGTGGACTTCATCTTCGGCAACGCCGTGGTGGTGTTCCAAAGCTGCAACATATACGCTCGGAAGCCAATGCCGCAACAAAAAAACACCATCACCGCCCAAGACCGGAAGGACCCCAACCAGAACACCGGAATCTCCATCCACGCTTGCAAGATCCTCGCCACCGCCGACCTCCAACCCTCCAAATCCTCTTTCCCCACTTTCCTCGGACGCCCCTGGAAATTATACTCTAGAGTCGTTTACATGGTTTCTTCAATCGGGGACCACATTCATCCACGTGGCTGGCTCGAGTGGCAGGGCTCTTTCGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCCGGCCCCGGTGCCGCCGTCGGTCAGCGGGTCAAATGGCCCGGTTATCGGGTCATTACTTCTACCCTTGAAGCCACCAAATTTACCGTTGGCCAGTTTATTTACGGCTCCTCTTGGCTGCCCTCCACTGGCGTCTCCTTTTCGGCTGGATTATCTGCTAACTAA 1818 56.0 MNNYNKLHSSVSGDTPTTSELSHDPNRGPSLPPPLSSTSRRRTRILFISLLSILLITASAVSAAVLIRSHIGGATSSEAHFPHNKPSQAISRACSLTLYPSLCLSSLLSFPGSLSADVHDLVHITLNLTLQHLNKALYSSSQIPISQFSNNPLAHSAYEDCMELLNDAVDAFSLSLFSPAASNHDVVTWLSAALTYHDTCMDGFADVADPVKDQMAAKLSDLSEMISNSLAIFSGFGGGLPVQNRRRRRLMDSGSEWAAENGVTEGEFPEWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIAAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGPSKHQAVALRLSADHAVVYHCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPQQKNTITAQDRKDPNQNTGISIHACKILATADLQPSKSSFPTFLGRPWKLYSRVVYMVSSIGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTLEATKFTVGQFIYGSSWLPSTGVSFSAGLSAN 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8595177 8601317 + Tan0005200.1 Tan07g0472 758003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0472 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 234 IPR035513 -
Tan07g0472 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 87 236 IPR035513 -
Tan07g0472 605 MobiDBLite consensus disorder prediction 1 38 - -
Tan07g0472 605 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Tan07g0472 605 Gene3D - 284 602 IPR012334 -
Tan07g0472 605 Pfam Plant invertase/pectin methylesterase inhibitor 89 232 IPR006501 GO:0004857(InterPro)
Tan07g0472 605 SUPERFAMILY Pectin lyase-like 285 601 IPR011050 -
Tan07g0472 605 Pfam Pectinesterase 290 587 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan07g0472 605 FunFam Pectinesterase 284 602 - -
Tan07g0472 605 SMART PMEI_2 85 232 IPR006501 GO:0004857(InterPro)
Tan07g0472 605 PANTHER PECTINESTERASE 46 593 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan07g0472 605 NCBIfam pectinesterase inhibitor domain 79 234 IPR006501 GO:0004857(InterPro)
Tan07g0472 605 CDD PMEI-like_3 93 238 - -
Tan07g0472 605 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0779 Tan-Chr6:6141224 Tan07g0472 Tan-Chr7:8595177 1.00E-144 dispersed
Tan06g1245 Tan-Chr6:13834761 Tan07g0472 Tan-Chr7:8595177 3.50E-103 dispersed
Tan06g1246 Tan-Chr6:13886207 Tan07g0472 Tan-Chr7:8595177 9.60E-101 dispersed
Tan07g0472 Tan-Chr7:8595177 Tan11g1757 Tan-Chr11:18067381 5.90E-122 dispersed
Tan08g2262 Tan-Chr8:74117403 Tan07g0472 Tan-Chr7:8595177 1.30E-123 transposed
Tan01g0107 Tan-Chr1:1054518 Tan07g0472 Tan-Chr7:8595177 1.60E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0472 - - - 0.0