Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0542 ATGTCTCATCAACTAATTCAAGTAATTTCTCTCAATTATAGTCTAATTACACCATCAAAGTCTCATCCACTAATTCAATGTTGCCGCCTTGCTCTCTTCTCAACCGTTCGATCTCTGGCGGTTAAATCCCCACTCCTCCTCTCCGCCGTTGGATCTCCACTCAATTTGCCATTTCTGATTACGAGGACTGTGAAAATGGGCGAAGCCGTGGTGGTGAGTTCTGAGGACAGGGCTGACATCGACGATGTGGCGGCGGATGCGGACAGTATGGGCGGCACTCACAAACCCAACCGAGAAGGTAGTTCCAGTGCTGTTGGGATTGGGATTAAGTGGGAGCGTTTTTTGCCCAAGATGATGCTCAGGGTCTTGCTTGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCCCTGCTAACGCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGAGAACTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCCACTGATTATGTTGCTGGAGTTCAGAGGAATAGCAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTCGAGGTTGGAAGTACGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTTCAAATGACTTCAAGCTACAGAAAGATGAACGTCACATCAATTTGAGTCAGAGATTGGTTATGCATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATTACACTAAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTCCTAATTTTGCAAGTGAAGCAGGTGATAATAAGGATTTCCCATCCAGAGATGCAACTGCATTGAATCATGCCTGTATCAAGTATCCTGATAACTACCAAAGAAGTTCTCCTTCCACAAATGCTGGGACAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCTACCTAATGATTTTGAGGACCGTGCTGCAGAAGGACGGGCTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAAACACTTCAAGCAAAATCAAACAGTATTTGTGATGAACAAAAGGAATATGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATACCATTAATCCTACGCTAAGCCTACAAAAGAGTAATACTTCTATGCCTCTGATAACAAGTCAATCTGCTCACTCTGAAGCTGCAAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCAATGCTCGGGCTATGGCTCTTTACTTTCTCCCAATTTGTGTACACAACGGGGTACCCCATCGTCTCCACGCCCAACTTTAGTCGCTCATCCCGAACCCATCTTTGCAAAACAGACGGTTTATCCCTTAAACCTTGAGAATCATAATTTTGAGCCGTTTCTAAACCAGCATCCCAACGTAAGCAATCCAGGAAGCCGAAAGATAGAAAACTCAGGGCAAAAGTTGGAGTGTGCAGAAAATCAAGGTCATATATCACCACCTACCACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGCAATACAAGTCATGTTCGAAGTGTGGGATTTCCTAGCACTTGCGGAAGCAACAGCAACGTCGACTGGGTTGGCATTGCTGCAAGGGTTACATCTGAGAGCAAAAATGAAGAAGCTATGTTTTCTCAAGGAGGTGATTCTCACCGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAGCGAAAAGATCGATGTTATGAGAAAAAGGTAGTTAGCATTTCATTTCATGTTCAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATACACCGATCCATTGCCTGCAGAAACCAACGCCAATACATCCAACGGTTAG 2298 44.21 MSHQLIQVISLNYSLITPSKSHPLIQCCRLALFSTVRSLAVKSPLLLSAVGSPLNLPFLITRTVKMGEAVVVSSEDRADIDDVAADADSMGGTHKPNREGSSSAVGIGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDIQEKVEVTSENETASNHSTDYVAGVQRNSKNIEKGSDTQSSCTKVDFEVGSTMQENSQPRQGKASSNDFKLQKDERHINLSQRLVMHENESGGLAMSCYVNADLPITLSMGLEPINDGRSPNFASEAGDNKDFPSRDATALNHACIKYPDNYQRSSPSTNAGTNNFGSALHLDLSLRRCLPNDFEDRAAEGRATLKHSSASAFTRYTFRPLQTLQAKSNSICDEQKEYGSNPEHIGSIAATSTSDTINPTLSLQKSNTSMPLITSQSAHSEAAKSSTSETVIPLQVSVKDLMSNNQCSGYGSLLSPNLCTQRGTPSSPRPTLVAHPEPIFAKQTVYPLNLENHNFEPFLNQHPNVSNPGSRKIENSGQKLECAENQGHISPPTTDHSANSSLCGGNTSHVRSVGFPSTCGSNSNVDWVGIAARVTSESKNEEAMFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVVSISFHVQVRYESRKKLAEQRPRVKGQFVRRVYTDPLPAETNANTSNG 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9036205 9042671 + Tan0007946.1 Tan07g0542 758073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0542 765 ProSiteProfiles CCT domain profile. 706 748 IPR010402 GO:0005515(InterPro)
Tan07g0542 765 ProSiteProfiles Response regulatory domain profile. 121 239 IPR001789 GO:0000160(InterPro)
Tan07g0542 765 SMART REC_2 120 235 IPR001789 GO:0000160(InterPro)
Tan07g0542 765 Pfam CCT motif 697 748 IPR010402 GO:0005515(InterPro)
Tan07g0542 765 MobiDBLite consensus disorder prediction 301 316 - -
Tan07g0542 765 SUPERFAMILY CheY-like 114 245 IPR011006 -
Tan07g0542 765 PANTHER TWO-COMPONENT RESPONSE REGULATOR 104 315 IPR045279 GO:0009736(InterPro)
Tan07g0542 765 MobiDBLite consensus disorder prediction 301 322 - -
Tan07g0542 765 Gene3D - 118 328 - -
Tan07g0542 765 Pfam Response regulator receiver domain 122 233 IPR001789 GO:0000160(InterPro)
Tan07g0542 765 CDD psREC_PRR 122 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1012 Tan-Chr3:66538547 Tan07g0542 Tan-Chr7:9036205 6.00E-42 dispersed
Tan05g2421 Tan-Chr5:75394197 Tan07g0542 Tan-Chr7:9036205 6.20E-09 dispersed
Tan07g0542 Tan-Chr7:9036205 Tan10g0003 Tan-Chr10:143696 2.90E-33 dispersed
Tan07g0542 Tan-Chr7:9036205 Tan09g2096 Tan-Chr9:71348710 1.50E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27902 PF00072 Response_reg 8.10E-21 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0542 K12130 - csv:101209788 1103.2