Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0667 ATGAGTACTGTTGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACGTGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCTATTGATTCTCAAGCAGCAACTTCTCGTCCAGAGTGCAGAGGTGTCTCTTTCAGGAAAGCTTCTGCTGGTGGTGGTTTTGCCAGGAATCGAAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGCTGCCCTACTTGTCGCCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTCTGTACGAAAACCTAGGTTGCGTTGACATGTTCCCATACTACAGCAAGCTCAAACATGAGAAGAACTGTAAATACCGCCCGTACAACTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGGTGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCCGTATACATGGCGTTCCTCCGGTTCATGGGCGACGATGACGACGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGCAGAAAACTCATCTGGCAAGGTATGCCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCACGACGGATTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGCTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA 981 47.5 MSTVEFREKGMYQQQKSREERASSAASFCKEVTELRLASIDSQAATSRPECRGVSFRKASAGGGFARNRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCLYENLGCVDMFPYYSKLKHEKNCKYRPYNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGQELKLKVAGRIWRVR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10413666 10416833 - Tan0000821.1 Tan07g0667 758198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0667 326 MobiDBLite consensus disorder prediction 1 21 - -
Tan07g0667 326 SUPERFAMILY RING/U-box 69 120 - -
Tan07g0667 326 CDD RING-HC_SIAHs 76 114 - -
Tan07g0667 326 SUPERFAMILY TRAF domain-like 131 322 - -
Tan07g0667 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 186 IPR013083 -
Tan07g0667 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 130 IPR013083 -
Tan07g0667 326 FunFam E3 ubiquitin-protein ligase SINAT5-like 187 319 - -
Tan07g0667 326 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 78 113 IPR049548 -
Tan07g0667 326 FunFam E3 ubiquitin-protein ligase SINAT3 128 186 - -
Tan07g0667 326 Pfam Sina, TRAF-like domain 222 318 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan07g0667 326 ProSiteProfiles Zinc finger RING-type profile. 78 114 IPR001841 -
Tan07g0667 326 Pfam Sina, zinc finger 127 202 - -
Tan07g0667 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 187 319 IPR008974 GO:0005515(InterPro)
Tan07g0667 326 ProSiteProfiles Zinc finger SIAH-type profile. 131 191 IPR013010 GO:0008270(InterPro)
Tan07g0667 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 27 321 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0667 Tan-Chr7:10413666 Tan07g0669 Tan-Chr7:10413666 1.50E-196 dispersed
Tan07g0667 Tan-Chr7:10413666 Tan07g0668 Tan-Chr7:10413666 1.50E-196 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0667 K04506 - csv:101213438 637.106