Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan07g0667 | ATGAGTACTGTTGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACGTGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCTATTGATTCTCAAGCAGCAACTTCTCGTCCAGAGTGCAGAGGTGTCTCTTTCAGGAAAGCTTCTGCTGGTGGTGGTTTTGCCAGGAATCGAAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGCTGCCCTACTTGTCGCCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTCTGTACGAAAACCTAGGTTGCGTTGACATGTTCCCATACTACAGCAAGCTCAAACATGAGAAGAACTGTAAATACCGCCCGTACAACTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGGTGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCCGTATACATGGCGTTCCTCCGGTTCATGGGCGACGATGACGACGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGCAGAAAACTCATCTGGCAAGGTATGCCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCACGACGGATTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGCTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA | 981 | 47.5 | MSTVEFREKGMYQQQKSREERASSAASFCKEVTELRLASIDSQAATSRPECRGVSFRKASAGGGFARNRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCLYENLGCVDMFPYYSKLKHEKNCKYRPYNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGQELKLKVAGRIWRVR | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10413666 | 10416833 | - | Tan0000821.1 | Tan07g0667 | 758198 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan07g0667 | 326 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Tan07g0667 | 326 | SUPERFAMILY | RING/U-box | 69 | 120 | - | - | |
Tan07g0667 | 326 | CDD | RING-HC_SIAHs | 76 | 114 | - | - | |
Tan07g0667 | 326 | SUPERFAMILY | TRAF domain-like | 131 | 322 | - | - | |
Tan07g0667 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 186 | IPR013083 | - | |
Tan07g0667 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 130 | IPR013083 | - | |
Tan07g0667 | 326 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 187 | 319 | - | - | |
Tan07g0667 | 326 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 78 | 113 | IPR049548 | - | |
Tan07g0667 | 326 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 128 | 186 | - | - | |
Tan07g0667 | 326 | Pfam | Sina, TRAF-like domain | 222 | 318 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Tan07g0667 | 326 | ProSiteProfiles | Zinc finger RING-type profile. | 78 | 114 | IPR001841 | - | |
Tan07g0667 | 326 | Pfam | Sina, zinc finger | 127 | 202 | - | - | |
Tan07g0667 | 326 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 187 | 319 | IPR008974 | GO:0005515(InterPro) | |
Tan07g0667 | 326 | ProSiteProfiles | Zinc finger SIAH-type profile. | 131 | 191 | IPR013010 | GO:0008270(InterPro) | |
Tan07g0667 | 326 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 27 | 321 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan07g0667 | Tan-Chr7:10413666 | Tan07g0669 | Tan-Chr7:10413666 | 1.50E-196 | dispersed | |
Tan07g0667 | Tan-Chr7:10413666 | Tan07g0668 | Tan-Chr7:10413666 | 1.50E-196 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan07g0667 | K04506 | - | csv:101213438 | 637.106 |