Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0753 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTACAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCCATCTCCTCATCAGCAGCAGGAGGAAACGTGTCTAATTCACCATCACTGGAATGCCCTAATGGTGCTTCAGAATCAAATGATGGTCAGTCAATGTCAAATGATGATTTGAATGAAGAAGATGATGATGACAACACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCAGATTGCTGTTTCTACTGCACCTACAGTGCATGGTGGATGTATCACACAGCCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCGTATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTATCCTCCTTTCCTTGGGATGCCACATGCAAGAATGGCTTTGCCCCTAGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTAGTGGTGGACGTTTTGCCAAGAAAAATGAAGTTAACTCTTCGAGCTCTACTATGAAGAACAAGAAATCTGGTTCTGGTCAAGCTATGTCGTCGCAGTCTGCTAGTTCGTCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCCATGGTCAACAAGAAGCAAGGCCCCAGTTGCATGAGGCATATGAAGCTCGTAGTTATGTGAATAGCAGTAGCCATTTTCATAACTACAGTAGCTTCCAAGCTTCGTCATATGGTTTACGCTCTGGTGAGAGAGGTGAAGATGGAGATTGTTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1026 45.61 MQSKSKSVNQLQSEPPNMQQTSSYSEPWWRSIGYNPISSSAAGGNVSNSPSLECPNGASESNDGQSMSNDDLNEEDDDDNTKDSQAASYGQGQQIAVSTAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKNKKSGSGQAMSSQSASSSGSEAVPGALAETWNSSHGQQEARPQLHEAYEARSYVNSSSHFHNYSSFQASSYGLRSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12108676 12122368 + Tan0001493.1 Tan07g0753 758284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0753 341 MobiDBLite consensus disorder prediction 1 68 - -
Tan07g0753 341 MobiDBLite consensus disorder prediction 308 341 - -
Tan07g0753 341 Gene3D - 165 227 - -
Tan07g0753 341 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g0753 341 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g0753 341 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g0753 341 MobiDBLite consensus disorder prediction 1 93 - -
Tan07g0753 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 283 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan07g0753 341 SMART cbf3 164 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g0753 341 MobiDBLite consensus disorder prediction 203 260 - -
Tan07g0753 341 ProSitePatterns NF-YA/HAP2 subunit signature. 170 190 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Tan07g0753 341 MobiDBLite consensus disorder prediction 224 259 - -
Tan07g0753 341 MobiDBLite consensus disorder prediction 203 219 - -
Tan07g0753 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 222 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0753 K08064 - - csv:101212961 542.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0753 Tan-Chr7:12108676 Tan08g1611 Tan-Chr8:65552975 4.70E-23 dispersed
Tan03g2781 Tan-Chr3:80816904 Tan07g0753 Tan-Chr7:12108676 1.10E-28 transposed
Tan06g0580 Tan-Chr6:4461910 Tan07g0753 Tan-Chr7:12108676 2.00E-44 wgd
Tan07g0753 Tan-Chr7:12108676 Tan09g0832 Tan-Chr9:59520094 2.60E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan07g0753 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.6 1.3e-55 214.2
Tan07g0753 . 102 341 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.5 1.5e-49 194.1
Tan09g0832 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 53.8 2.2e-48 190.3
Tan03g2781 . 16 218 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.7 4.7e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27913 PF02045 CBFB_NFYA 1.90E-26 No_clan Tan TF