Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0789 ATGTGGTCTGCTGCTGCTGCTGCTCAGAGGTCTCTCAATTACGGCCTTGGATCGGATATGGGCATGGTCGGCCTTCGAGATCTATTTGTTGTTGCTCCGGCTTCCTCTTTCAACCCTAATCCCCACCACCATGACGCGAATCTCATCTCCGATCCTCATTCCCTCGCTGTCTCCAACCCCGCCACCGCTCTCGGCGTTGGTGTTATTCCGCTTCTCACTGCCGGCCCCTGCCTCGGCGTTGAGGACGACAATCTTTTGAATAGTCGGGGTAGTAGCAGAGGCGGAGGGATTCACCTATGGCAGCAGAATCAACAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGATCATCACCTCCACAATGCCTCCGCTACCGACAATGAACTTATCGGCGGAGGAATCGGCATCGCCGGTGGATTGGCTTCGTCGTCATCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACTTGCTGTCGAAGCCGAGGGTTCGAGTGCACGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCGCGGCGGCGAGAGCGGCAACTTATGGCGGTCAATGCCAACGCCGCCGCTGGTTCCTCGGGCTCCACCTCCGGTGCGAAGAAACCGAGGCTTATCGCGTCGCAAACCACTTCTCACACTTCAACTTCGAACACAACTCCGCCGAGAAGCCTCGATACGAGCTCCAGTCACCAAGATGCTGGTTTTAACGAGGCATTACCAGGCCAAGTACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGATGGACGGCGGCGACGGCGACGTCGAATACGCCTATGAAGCGGTAGTGAAGATTGGGGGACATGTTTTCAAAGGGTTATTGCGCGACCAAGGCGTCGAACCCGGAGACCAGTTTCCTAATGTATCGGATTTGCATTTGGGCGACGGCGGCGGCGGAAGCAGAAACAATCGGAATGGTGGTTCTTCTTCTTCTCCGCTTGTTGTTCCATCGGACGTTTACAATGCGGCTGCCTCCGGCGGCGGTGGCGCTCCAGGTTTTCTCGGCGGATCAAATTACGGTAATCAAATCAGCTGA 1119 56.12 MWSAAAAAQRSLNYGLGSDMGMVGLRDLFVVAPASSFNPNPHHHDANLISDPHSLAVSNPATALGVGVIPLLTAGPCLGVEDDNLLNSRGSSRGGGIHLWQQNQQSTQHYLKKTPSSSLDHHLHNASATDNELIGGGIGIAGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFECTTHVKSTWVPAARRRERQLMAVNANAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSSHQDAGFNEALPGQVRAPAVFKCVRVTAMDGGDGDVEYAYEAVVKIGGHVFKGLLRDQGVEPGDQFPNVSDLHLGDGGGGSRNNRNGGSSSSPLVVPSDVYNAAASGGGGAPGFLGGSNYGNQIS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12643802 12646498 + Tan0006728.3 Tan07g0789 758320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0789 372 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 29 349 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Tan07g0789 372 MobiDBLite consensus disorder prediction 205 254 - -
Tan07g0789 372 Pfam Domain of unknown function (DUF702) 151 308 - -
Tan07g0789 372 NCBIfam LRP1 C-terminal domain 258 307 IPR006511 -
Tan07g0789 372 NCBIfam putative zinc finger domain, LRP1 type 153 195 IPR006510 -
Tan07g0789 372 MobiDBLite consensus disorder prediction 205 258 - -
Tan07g0789 372 MobiDBLite consensus disorder prediction 309 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0525 Tan-Chr4:4406819 Tan07g0789 Tan-Chr7:12643802 3.30E-57 dispersed
Tan07g0789 Tan-Chr7:12643802 Tan09g0761 Tan-Chr9:58024611 5.00E-47 dispersed
Tan07g0788 Tan-Chr7:12643802 Tan07g0789 Tan-Chr7:12643802 7.00E-189 tandem
Tan07g0789 Tan-Chr7:12643802 Tan07g0790 Tan-Chr7:12643965 1.60E-189 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27918 PF05142 DUF702 2.90E-58 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0789 K27807 - csv:101207487 490.345