Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0828 ATGGAACAGAGAAAGTACAGAGCCGATCTTCATCCATCCGCCTTCCTTGTCGTCCTCATTTTCCTCTCCCTTTCCGGGCGATCTGTCGTTCACGCCTACAACAACTTCACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAACAATGGACCGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCAGTTGTGCAAACATACAATTTTACCACGTACAAGCTTTGTGACTACGACGACGCATCGGAAAACGACACGACGGAATGGTCGGCCGCCGACCCGTCGGCGACCACTCCATACGCTGTGACGGTGGCCGTCCCACTGGTGAAAGAAGGAACCAACTATTTCTTCTCCGGCCACTACGACGGAGAGCAGTGCCAAAATGGGCAACAATTCAAAATAAACGTCGCTCATGGACAGGGCCTTCCAAAGAGCATGGGAGATTCTTCCAACGAAGCTCCGGCTCCGGTAGTTCCCGACTCCGGCGACCAAACAGAATCTGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCCAAAAACGACGTCGTTGATGATACTGATAGCGACAAGAAAGAAGCTTCAGGCTCCGTTTCGCTATTATCGCTTCACTTCAAGTTTAATGAATTTTTCTTTTTGTTTATTAGTTGGTATTGCCTGCATATTTCCTTTTACTTTTATTGA 735 48.84 MEQRKYRADLHPSAFLVVLIFLSLSGRSVVHAYNNFTVGDSLGWFDKLEKPAVDYQQWTVGKNFSLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVAVPLVKEGTNYFFSGHYDGEQCQNGQQFKINVAHGQGLPKSMGDSSNEAPAPVVPDSGDQTESAPDTIVPSSFDNPKNDVVDDTDSDKKEASGSVSLLSLHFKFNEFFFLFISWYCLHISFYFY 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13337525 13340776 - Tan0007926.1 Tan07g0828 758359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0828 244 MobiDBLite consensus disorder prediction 180 194 - -
Tan07g0828 244 SUPERFAMILY Cupredoxins 35 152 IPR008972 -
Tan07g0828 244 Gene3D - 33 157 IPR008972 -
Tan07g0828 244 Pfam Plastocyanin-like domain 46 146 IPR003245 GO:0009055(InterPro)
Tan07g0828 244 FunFam Early nodulin-like protein 18 33 155 - -
Tan07g0828 244 CDD Phytocyanin 35 152 - -
Tan07g0828 244 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055(InterPro)
Tan07g0828 244 PANTHER BLUE COPPER PROTEIN 21 170 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Tan07g0828 244 MobiDBLite consensus disorder prediction 159 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2146 Tan-Chr6:71160773 Tan07g0828 Tan-Chr7:13337525 2.70E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan07g0828 . 19 220 Phytocyanin Superfamily AT1G08500 54.4 2.6e-54 209.5
Tan09g0929 . 30 134 Phytocyanin Superfamily AT2G27035 59.0 1.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26