Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0883 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCCCGACACACTGGTGTCATGGTAGGTATGGGGCAGAAAGATGCTTATGTTGGTGATGAGGCACAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATCTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTTGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCTCATGCTATCCTCCGTCTGGACCTTGCTGGCCGTGATCTAACCGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGAGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTACGAGCAGGAACTTGAGACTGCCAAGAGCAGCTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGGTTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCATGAGACTACGTACAACTCAATCATGAAGTGTGACGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCAGACCGAATGAGCAAAGAGATCACAGCTCTTGCACCCAGCAGCATGAAAATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATCGTCCATAGGAAGTGCTTCTAA 1134 47.18 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15847794 15850610 + Tan0018604.2 Tan07g0883 758414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0883 377 Gene3D - 10 371 - -
Tan07g0883 377 PRINTS Actin signature 51 62 IPR004000 -
Tan07g0883 377 PRINTS Actin signature 63 85 IPR004000 -
Tan07g0883 377 PRINTS Actin signature 142 161 IPR004000 -
Tan07g0883 377 PRINTS Actin signature 28 37 IPR004000 -
Tan07g0883 377 PRINTS Actin signature 117 130 IPR004000 -
Tan07g0883 377 PRINTS Actin signature 238 254 IPR004000 -
Tan07g0883 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan07g0883 377 FunFam Major actin 261 340 - -
Tan07g0883 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan07g0883 377 FunFam Actin, muscle 182 273 - -
Tan07g0883 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Tan07g0883 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan07g0883 377 SMART actin_3 7 377 IPR004000 -
Tan07g0883 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan07g0883 377 FunFam Putative actin-related protein 5 341 369 - -
Tan07g0883 377 Gene3D - 140 340 - -
Tan07g0883 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tan07g0883 377 Pfam Actin 5 377 IPR004000 -
Tan07g0883 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Tan07g0883 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Tan07g0883 377 PANTHER ACTIN 8 369 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0883 K10355 - - csv:101215469 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0883 Tan-Chr7:15847794 Tan07g0885 Tan-Chr7:15847794 1.50E-219 dispersed
Tan07g0882 Tan-Chr7:15847224 Tan07g0883 Tan-Chr7:15847794 1.50E-219 tandem
Tan07g0883 Tan-Chr7:15847794 Tan07g0884 Tan-Chr7:15847794 1.50E-219 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 1.1e-214 743.0
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.1e-214 743.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.2e-214 741.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.5e-213 738.0
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.9e-212 734.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT2G37620 96.1 1.2e-200 696.4
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 9.2e-214 740.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.9
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-212 736.5
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 9.5e-211 729.9
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G59370 96.1 8.4e-199 690.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.1e-214 741.1
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-213 739.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-213 737.6
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 2.3e-212 735.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 4.3e-211 731.1
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G46520 95.8 2.4e-198 688.7
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.2e-215 745.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.4e-214 742.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 741.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 5.4e-214 740.7
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 3.0e-212 734.9
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G12110 96.1 4.4e-200 694.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.5e-208 722.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.6e-208 721.8
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-207 719.5
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 7.3e-195 677.2
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 5.2e-209 724.2
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.6e-208 721.8
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-208 721.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.8e-208 720.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.7e-207 719.2
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT1G49240 91.9 1.6e-194 676.0
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-214 741.5
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.7e-213 738.4
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.0e-212 736.5
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G09810 96.1 4.4e-200 694.5
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.5e-57 219.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 4.2e-57 218.0
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.1e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.2e-54 209.9
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 1.5e-57 219.5
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 6.1e-56 214.2
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 8.9e-55 210.3
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29350 70.2 1.4e-52 203.0
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 1.8e-63 239.2
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29340 76.1 3.9e-58 221.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.3e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 3.4e-54 208.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276