Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g0890 ATGCTTGAAATTTCGCCTTCACCGGAAAACTCTTCCGCCGCCGCCGCCGAGGAAGACGGTGCGGCGGCCTCTGCCGGACTTGCGGAGGAGGCTGACCGAAGTTGGGCCGGTAACCGGTGGCCGCGAGAGGAGACCATCGCTTTGCTTAAGGTGAGGTCGACTATGGACACTGTGTTTAGAGATGCAAGCCTTAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAAACGAAGTGCGAAAAAATGCAAAGAGAAGTTTGAGAACATCTACAAGTATCACAAAAGGACTAAAGATAGCAGATCAGGCAAACCGAATGGGAAAAATTATAGATATTTTGAGCAATTAGAAGCTTTAGATAATCATCCATTGCTGCCTTCTCAAGCTGATTCAATGGAAGAAATCCCATTGATTATCCCAAACAATATTGTTCACAATGCAATTCCATGTTCCGTAGTAAACCCGGGTTCAAATTTTGTTGAAACTACCACCACATCCATATCAACTTCGACAACGTCTTGCTCGAGCAAAGAGTCGGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGCTAATGAATGAAGTGATTGAGAAGCAAGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAACAAGAGAGGTTAGCTAGAGAAGAAGAATGGAAGGTGCAAGAATTAGCTCGAATCAAGAAAGAGCGTGAGCGTTTAAATCAAGAGAGATCGATCGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGATGTTCTCTGAACAGGTGGGCACCGTGCAGTTTCCCGAGAGCTCGATTTTGATGGAGAATTTATCGGAAAAGCAAGATGATGGTAATGTTGACAGAAACACAAGCAATCAAGAGAATAGCAACAATGGAAATGCGAACCAGATTAGCTCGTCTCGGTGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTGCAGATGAAGTACCAAGAAAATGGGCCTAAGGGTCCTCTCTGGGAGGAAATATCACTGGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAGAGTAAAGGAAAGCAACAAAAAACGACCTGAGGATTCGAAGACCTGCCCTTATTTCCAGCAGCTTGACGCATTGTACAAACAGAAATCCAAGAAAGTAGTCGACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGTCAAGACGAAAACCACCAACCTGAATCAGCAACAGACGACGGGGAAGCTGAGAATGCTGATCAGAACCAAGAAGATGAAGGGGAAGATGAAGATGAAGACGAGGACGAAGATTATCAGATTGTAGCCAACAACAACAGTAATCAAATGGAAGTAGCCAGCTGA 1473 44.47 MLEISPSPENSSAAAAEEDGAAASAGLAEEADRSWAGNRWPREETIALLKVRSTMDTVFRDASLKAPLWEEVSRKLAELGYKRSAKKCKEKFENIYKYHKRTKDSRSGKPNGKNYRYFEQLEALDNHPLLPSQADSMEEIPLIIPNNIVHNAIPCSVVNPGSNFVETTTTSISTSTTSCSSKESGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEQERLAREEEWKVQELARIKKERERLNQERSIAAAKDAAVLSFLKMFSEQVGTVQFPESSILMENLSEKQDDGNVDRNTSNQENSNNGNANQISSSRWPKEEIDALIQLRTNLQMKYQENGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKVVDNPANPNYELKPEELLMHMMGGQDENHQPESATDDGEAENADQNQEDEGEDEDEDEDEDYQIVANNNSNQMEVAS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16316341 16318813 - Tan0014943.1 Tan07g0890 758421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g0890 490 Coils Coil 239 259 - -
Tan07g0890 490 MobiDBLite consensus disorder prediction 1 36 - -
Tan07g0890 490 SMART sant 317 379 IPR001005 -
Tan07g0890 490 SMART sant 36 98 IPR001005 -
Tan07g0890 490 FunFam Trihelix transcription factor GT-2 40 101 - -
Tan07g0890 490 FunFam Trihelix transcription factor GT-2 321 382 - -
Tan07g0890 490 CDD GT1 319 384 - -
Tan07g0890 490 ProSiteProfiles Myb-like domain profile. 38 96 IPR001005 -
Tan07g0890 490 ProSiteProfiles Myb-like domain profile. 313 377 IPR001005 -
Tan07g0890 490 Coils Coil 195 226 - -
Tan07g0890 490 CDD GT1 38 103 - -
Tan07g0890 490 MobiDBLite consensus disorder prediction 436 490 - -
Tan07g0890 490 MobiDBLite consensus disorder prediction 450 476 - -
Tan07g0890 490 Pfam Myb/SANT-like DNA-binding domain 38 124 IPR044822 -
Tan07g0890 490 Pfam Myb/SANT-like DNA-binding domain 319 406 IPR044822 -
Tan07g0890 490 PANTHER FI21293P1 23 458 - -
Tan07g0890 490 MobiDBLite consensus disorder prediction 300 320 - -
Tan07g0890 490 MobiDBLite consensus disorder prediction 291 320 - -
Tan07g0890 490 Gene3D - 40 101 - -
Tan07g0890 490 Gene3D - 321 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g0890 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3335 Tan-Chr1:90917922 Tan07g0890 Tan-Chr7:16316341 4.60E-88 dispersed
Tan01g3336 Tan-Chr1:91008285 Tan07g0890 Tan-Chr7:16316341 2.20E-88 dispersed
Tan07g0169 Tan-Chr7:4244448 Tan07g0890 Tan-Chr7:16316341 3.70E-76 dispersed
Tan07g0170 Tan-Chr7:4244448 Tan07g0890 Tan-Chr7:16316341 3.30E-76 dispersed
Tan07g0890 Tan-Chr7:16316341 Tan08g1764 Tan-Chr8:69638116 1.50E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27924 PF13837 Myb_DNA-bind_4 3.60E-22 CL0123 Tan TF