Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan07g1017 | ATGTCGTCGTCAAATTCACCATGTGCGGCGTGCAAATTCCTAAGGCGAAAATGCACACAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTCGCGAACGTGCACAAGGTATTCGGAGCGAGCAACGTGTCTAAGCTTTTGAACGAGCTGAACGCAACGCAGCGTGAGGATGCCGTTAACTCATTAGCCTACGAGGCTGAGTTTCGTTTGCGTGACCCTGTCTACGGTTGCGTCGGTCTCATCTCTGTCCTCCAACACAAACTCAAACAAATGCAAAGCGACCTCTACAATGCTAAAAAGGAACTCGCCTCTTATATTGGCCCTCAAGCTATGCTCCCTATTCTCCACCCTCCCGCCGCCATCCTCCCTCCTCAACCCGCCGCCGGCAGCCCTTCCTCCTCCGCTATTCTCCCTTACAATAACATCTCCCCTATGCTCGGAATCCCCCCTTCCTCCTCTCAGCAGCAACATCACCAAATACAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAATTGTTCGAGGCCCAACAGTTGGCTGCTGCGGTGGCCGCTAGAGAGCAGCAGGAAATGTTTAGAGCCTACGAGCAGAAACAAACCCAACATATTCCTCCCCATCATTCTCAGCGCCAACAACATGAGCTCTTGAGGTTCAACGGGTTCGACCCGGCTGGTACTGGCAGCGGTGGGTTTAATCAAATGAATTCCGCGTCTAATTTAACATTGGGGACTTTTGTTGATAATAGCTACCAAATGCAATCACAACCTGAACATTCGCATTCGCATTCGCATTCACATCAGCATCATCATCAGCCGCTTCAGGTACAGCTGTTTCTTCAGCCACAACAAACACAAGTGGACCAACAGCAGCAGAATCAACAGCCCCATCCACACCAATCACAGCAAACCCAGAAGCCTGAAGCCACTGCAGAAGATGGTAGGAATATTAACATTGGCCCATCTTGTTAA | 984 | 50.2 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILHPPAAILPPQPAAGSPSSSAILPYNNISPMLGIPPSSSQQQHHQIQQQQQQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQHIPPHHSQRQQHELLRFNGFDPAGTGSGGFNQMNSASNLTLGTFVDNSYQMQSQPEHSHSHSHSHQHHHQPLQVQLFLQPQQTQVDQQQQNQQPHPHQSQQTQKPEATAEDGRNINIGPSC | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 25342397 | 25343380 | + | Tan0006006.1 | Tan07g1017 | 758548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan07g1017 | 327 | Coils | Coil | 86 | 106 | - | - | |
| Tan07g1017 | 327 | MobiDBLite | consensus disorder prediction | 275 | 315 | - | - | |
| Tan07g1017 | 327 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 202 | - | - | |
| Tan07g1017 | 327 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Tan07g1017 | 327 | MobiDBLite | consensus disorder prediction | 257 | 327 | - | - | |
| Tan07g1017 | 327 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Tan07g1017 | 327 | MobiDBLite | consensus disorder prediction | 150 | 172 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan07g1017 | Tan-Chr7:25342397 | Tan08g0946 | Tan-Chr8:13911607 | 5.20E-48 | dispersed | |
| Tan07g1017 | Tan-Chr7:25342397 | Tan09g2289 | Tan-Chr9:72856130 | 8.10E-41 | transposed | |
| Tan07g1017 | Tan-Chr7:25342397 | Tan07g1392 | Tan-Chr7:64748048 | 8.10E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27932 | PF03195 | LOB | 2.40E-41 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan07g1017 | - | - | - | 0.0 |