Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1029 ATGGCGTTCAAGAAAACCCTAGCACAGCGTCTCTTCAACATATCCCAAATTTCCTCCCAATCCCTCACCAAATGCCGGATTTCTTCGTCTTCGATTGGGTCTCGTGTTCCTCCCAATACCAATACTGCGAACATTGCTCATGATCCCGGAGATAATGCGGTTTTTCGTCGCTTCCTTCACAAGAGAGCGGTTTCTCAGCCGGCAATGTCGCCGGAGCTCCGGGAATTTGCGGCCGGAGGGAACATGGTGGAGAAGTTCAAATCACTAGGGATTGCTACTGATCGTATCCGACTCGATTGCCTTCGTCCCCCTGCTTGCGAGTCGTTGGCTTCGGATCCGGATAGGTCAGATGTGAAAGATGGTTTGACGGTTGAGGATGCGAGGAAGTTGCTCAGGGTAGCGAGGATGGAGATGGTGAAGTGGAAGTTGAGAGAAATTCAGAAATCATGGATTCCGTACTCGGAATTCGTTAGGGTTTGTCGTCAGGGATGTGATGATCCTGCGCAGGGTCTTGAAATTGCTCAAATGCTTGATGAATCAGGGGCTGTGATTGTCTTAGGGAACGTTGTGTACCTCAAGCCTGAACAGGTAGCTAAAGCCATTGAAGGCCTCATTCCCTTACCAGCAACAATCATTCCAAATGATGCTAGAAGGAAAGAGCTTGAACAAATGGAGATGCAGAAAGCTGTGATTGACAAAAGAGCTGAAAAGCTCGTACGACGAGAGCTCTGGTGTGGACTGGGCTTCCTCGTTGCTCAAACAGCTGCATTCATGAGGCTCACCTTCTGGGAGCTCACATGGGATGTCATGGAGCCAATTTGCTTCTATGTCACCTCAGGTTACTTTATTGCTTGCTATACCTTCTTTCTCAGGACCTCGAGGGAGCCTTCGTTCGAAAGCTTCTTCCAAAGCCGGTTTAGCACAAAGCAGAAGCGCCTGATGAAGCTTCAGAATTTCGATATTGCTCGTTACAACGAACTCCGAAGAGCTTGTTTTCCAAATTCCTCAGCTAAAGGGCTTTCCCCTCTAGATTCTATGGTGTATGATAATGCAGCAAAGGTGCAGTTGGAATATTTACATCATTAA 1086 47.88 MAFKKTLAQRLFNISQISSQSLTKCRISSSSIGSRVPPNTNTANIAHDPGDNAVFRRFLHKRAVSQPAMSPELREFAAGGNMVEKFKSLGIATDRIRLDCLRPPACESLASDPDRSDVKDGLTVEDARKLLRVARMEMVKWKLREIQKSWIPYSEFVRVCRQGCDDPAQGLEIAQMLDESGAVIVLGNVVYLKPEQVAKAIEGLIPLPATIIPNDARRKELEQMEMQKAVIDKRAEKLVRRELWCGLGFLVAQTAAFMRLTFWELTWDVMEPICFYVTSGYFIACYTFFLRTSREPSFESFFQSRFSTKQKRLMKLQNFDIARYNELRRACFPNSSAKGLSPLDSMVYDNAAKVQLEYLHH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26935636 26938171 - Tan0010273.1 Tan07g1029 758560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1029 361 Pfam Mitochondrial calcium uniporter 169 327 IPR006769 -
Tan07g1029 361 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 77 335 IPR039055 GO:0005262(PANTHER)|GO:0015292(PANTHER)|GO:0031305(PANTHER)|GO:0036444(PANTHER)|GO:0051560(PANTHER)|GO:0051560(InterPro)|GO:1990246(PANTHER)
Tan07g1029 361 Coils Coil 221 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1029 K20858 - - csv:105434446 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4886 Tan-Chr1:114795387 Tan07g1029 Tan-Chr7:26935636 6.00E-79 dispersed
Tan03g1428 Tan-Chr3:70674917 Tan07g1029 Tan-Chr7:26935636 2.20E-78 dispersed
Tan05g0559 Tan-Chr5:3968902 Tan07g1029 Tan-Chr7:26935636 9.70E-37 dispersed
Tan05g0560 Tan-Chr5:3968902 Tan07g1029 Tan-Chr7:26935636 9.70E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g912 . . Bda04g00320 Bda10g00321 . . Bma09g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1347 . Lsi01g01053 . . . . . . . . Bpe06g00247 Bma03g01058 . Sed01g0082 . . . . . . . . Bhi10g02232 Tan07g1029 Cmetu11g0018 . Hepe10g0829 . . . . . . . . . . . Chy02g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005008 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40