Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1075 ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCAAACCAGAGGTTATTGATCCTCCCCAAAATGAAGATGTAATGGACATAAGGGAAACCGTGGACGATCCAGCTCAAAATGAACTTAAACCAAATGTTGCTGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTATCCACCAATACATCAGTGTTCAAATGGGCATACACTATGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGTAGGCACGAACTTGGCAATATTAGATGTCTTGCATTGGAGAAGGTGGCCGCATCGCTAGAACTTCCATGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGTAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTTGATCGTTGGTGACATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTAGATATGCACAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACGTGGATGCTAACGGTAATTTTCCTCGTAGACTTTTGTTTCAGTTCTCAGGCTCCCTACTTTGTTTCTTACCATTGTTAG 663 42.53 MASGSPYFDDMRSKPEVIDPPQNEDVMDIRETVDDPAQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECLIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVIFLVDFCFSSQAPYFVSYHC 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30774004 30777375 - Tan0009144.2 Tan07g1075 758606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1075 220 SUPERFAMILY TRAF domain-like 110 215 - -
Tan07g1075 220 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Tan07g1075 220 Pfam Sina, zinc finger 106 181 - -
Tan07g1075 220 CDD RING-HC_SIAHs 55 93 - -
Tan07g1075 220 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Tan07g1075 220 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Tan07g1075 220 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 207 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan07g1075 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Tan07g1075 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 109 IPR013083 -
Tan07g1075 220 SUPERFAMILY RING/U-box 49 97 - -
Tan07g1075 220 MobiDBLite consensus disorder prediction 1 23 - -
Tan07g1075 220 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Tan07g1075 220 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1075 Tan-Chr7:30774004 Tan11g1557 Tan-Chr11:14397708 9.70E-115 dispersed
Tan07g1074 Tan-Chr7:30774004 Tan07g1075 Tan-Chr7:30774004 5.30E-119 tandem
Tan07g1075 Tan-Chr7:30774004 Tan07g1076 Tan-Chr7:30774004 2.90E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1075 K04506 - csv:101220834 420.239