Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1215 ATGGACTTGACTCCTGCAATTTCCACTGCCGCTGCCGTCATTGCCACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGGCGCTGAAACACCCATCAAAATTAAACCCACCACCAAATCTCAGCCGTTCACCAACGGCGTCCTCAAGCGCCACCACCACACGGCACCACCGCCGCCGCCGGTGGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCTTTAGACGGCTGCGGGGAGTTCATGCCCTCCCCCACCGCCACCGCCAACGATCCCACCTCCCTCAAATGCGCCGCCTGCGGCTGTCACCGGAATTTCCACCGCCGTGAGCCGGAGGACATAATCGCCACTCCGACGACAACCCACGTCATTGAGTACCAACCCCACCACCGTCACCACCCTCCGCCGCCGCTTGCGGCCGCGGCGGCCCACCGGAGCCCGAGCTCTGCCTCCCCTCCGCCGATCTCGTCCTCGTACTACCCTTCAGCCCCACACATGCTTCTCGCCCTCTCCGGCGGCATGCCGGAGAACGCCGGCGGTGGATTCCACCACTCGATTCTGACGCCGAGTCCGAATTCGAGAAAGCGATTTAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGATGGCGGCCAGAATATCAACGGCGGGAGCGGCGATGGAGATGAGAAAATTAACGGCGGCGGCGAGGCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA 885 58.42 MDLTPAISTAAAVIATGGGAVKSPELGAETPIKIKPTTKSQPFTNGVLKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATANDPTSLKCAACGCHRNFHRREPEDIIATPTTTHVIEYQPHHRHHPPPPLAAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGMPENAGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGQNINGGSGDGDEKINGGGEAHAAANGSSSSS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49924779 49927781 + Tan0004152.1 Tan07g1215 758746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1215 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Tan07g1215 294 MobiDBLite consensus disorder prediction 131 161 - -
Tan07g1215 294 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Tan07g1215 294 MobiDBLite consensus disorder prediction 254 294 - -
Tan07g1215 294 SUPERFAMILY Homeodomain-like 192 259 IPR009057 -
Tan07g1215 294 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Tan07g1215 294 MobiDBLite consensus disorder prediction 21 59 - -
Tan07g1215 294 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Tan07g1215 294 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Tan07g1215 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan07g1215 294 Gene3D - 191 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1081 Tan-Chr4:9709979 Tan07g1215 Tan-Chr7:49924779 4.70E-45 dispersed
Tan07g1215 Tan-Chr7:49924779 Tan11g2213 Tan-Chr11:61205966 4.90E-37 dispersed
Tan07g1215 Tan-Chr7:49924779 Tan11g0514 Tan-Chr11:4353834 4.40E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27950 PF04770 ZF-HD_dimer 2.10E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1215 - - - 0.0