Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1256 ATGGAGGCTCCAGCTTTGGTACTGAAGAACGAGGAGAATCTCAGAATATGTTGGACAGAAGGCCATACTCAGGCCATGAGACGTGTCAAGAGACGGAGGAGAGATCACTCCCCCGCCACCGCCGCCGATCAAACGAATAAGCAGCCATGTCTTCAGCAACAATCCGATCAAGCTCCGACCACTACCACAAAACGGAGTTCAAGATTTCGTGGCGTCAGCAGGCATAGATGGACGGGTCGATTCGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAAAAGAAGAAGGGCAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATTACTAACTTCCCAATAACAGAATATGAAAAGGAGATTGAGATCATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTGAGAAGGAAGAGCAGTGGATTCTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCCGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCTAAAGCCTCCGCCGCCGCCCGCTGCCCCCAACGAAACCCATATGGCGTCGGACCCCCACAAAGAACTCTGCAACTCCATCTCCATTCCAGTAGAAGAAACTTCCCTCTTCAAAAACCATCACTACGACGTTGATTCCTTCCATTCCCTTCAAAAGCAAGAGCTTCTTGAAAGCTGCAGCGCCCCTCTAAACGGTTACGCTAAATCTTCTTCTCCATCAGCACTCGACCTCCTTTTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCTGTGGACGAGGCTGATAATGGAGAAGAGGCGAAGACTCGAGCACAGCTCAACAGTGTCTTTGATGAGTTTGGAGACGTCTTCTGTGATAGACTTGCAGATGTACCTGAAAGTGAGCTTCATTCGTTCTTTAATGGCACATTTCACCACTTCAAAACATCCTGA 1143 46.98 MEAPALVLKNEENLRICWTEGHTQAMRRVKRRRRDHSPATAADQTNKQPCLQQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPITEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPAAPNETHMASDPHKELCNSISIPVEETSLFKNHHYDVDSFHSLQKQELLESCSAPLNGYAKSSSPSALDLLFRSSFFKKLVETNSNLSVDEADNGEEAKTRAQLNSVFDEFGDVFCDRLADVPESELHSFFNGTFHHFKTS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 56439284 56442747 - Tan0022712.1 Tan07g1256 758787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1256 380 SUPERFAMILY DNA-binding domain 67 132 IPR016177 GO:0003677(InterPro)
Tan07g1256 380 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 CDD AP2 67 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 SMART rav1_2 68 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 MobiDBLite consensus disorder prediction 41 67 - -
Tan07g1256 380 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 243 - -
Tan07g1256 380 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 Pfam AP2 domain 67 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 MobiDBLite consensus disorder prediction 25 71 - -
Tan07g1256 380 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Tan07g1256 380 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan07g1256 380 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2821 Tan-Chr1:57040634 Tan07g1256 Tan-Chr7:56439284 3.30E-90 dispersed
Tan07g1256 Tan-Chr7:56439284 Tan09g1597 Tan-Chr9:67738656 1.10E-78 dispersed
Tan07g1256 Tan-Chr7:56439284 Tan08g1184 Tan-Chr8:28966042 6.50E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27958 PF00847 AP2 2.40E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1256 - - - 0.0