Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1259 ATGATGATTAACGTTGTGATGGTATTAGCTTTAATGGTTGTGAATATGGTACCAACTCTAAGAGCTGGGATTGCTGAATTTGATGAATATTTGGTGCAAAAGGAAGATGAAGCGAAACAAGCTGCTCTTGAGGCGTTTCACTCTGATCCCATGAATGTGACTGAACATTTCAACTATCAAGTTCATTTAGCCTTAGAGGGATCATCAGGGAATAACAGTAGGAGAAGCCTGAGGAAATACAACGGCCCATGCTTGGCTACAAACCCGATCGACCGTTGTTGGCGATGTGACCCAAACTGGGCCAAGAATCGTAAGAAACTTGCCTCTTGCGTGTTGGGTTTTGGCCGAAAAACCACGGGTGGGAAAAGAGGGCAAATCTACACAGTCACGGACCCGTCCGACAACGACGTCGTAAACCCTAAACCCGGAACCCTCAGACACGCAGCGATTCAAAAGCAACCGCTGTGGATCATATTTGGGAGGAGTATGATCATCAGGCTATCGAAAGAGCTGTTGGTGACAAGCCATAAGACCATTGATGCACGTGGGGTCAATGTCCACATTGCGTATGGCGCTGGGCTTAGCATTCAATTCTCTCAGAATGTGATAATCCATGGGCTTCACATCCACCACATTGTGGCGGCCAGCGGTGGCATAATTCGAGACTCTTACAACCATGTTGGGATTCGAACGGTGAGTGATGGAGATGGAGTCTCTATCTTTGGATCCTCCAATATCTGGCTTGATCATTTGTCAATGTCCAGTTGCCAAGATGGACTAATCGACGCAATCCAAGGTTCGACTGCAATCACAGTCTCCAACTGTCATTTCACTCACCATAACGACGTGATGTTGTTTGGTGCAAGTGATTCGTACCAAGGAGACTCCATCATGCAAGTCACTGTGGCATTCAACCATTTCGGGAAAGGGTTGGTTCAGAGAATGCCCAGATGCCGATGGGGTTTCTTCCATGTCGTCAACAATGATTACACTCATTGGCTAATGTACGCCATTGGTGGAAGCCAACATCCAACGATTATCAGTCAGGGAAATCGTTTCATTGCGCCACCAAATCCTGCTGCCAAAAAGATTACAAACAGAAACTATGCAACAGAGAGTGTGTGGAAAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCCTTTTTTGTTCAGTCGGGAAATCCAAGCAAAAGAAGGCCATACAGCAGATTTGACATGATCAAGGCTAAGCCTGGCACTTTTGTTAGAAGACTTACACGCTTCTCTGGCGCACTCAATTGTTATCTTGGTCGACCATGCTAA 1314 46.19 MMINVVMVLALMVVNMVPTLRAGIAEFDEYLVQKEDEAKQAALEAFHSDPMNVTEHFNYQVHLALEGSSGNNSRRSLRKYNGPCLATNPIDRCWRCDPNWAKNRKKLASCVLGFGRKTTGGKRGQIYTVTDPSDNDVVNPKPGTLRHAAIQKQPLWIIFGRSMIIRLSKELLVTSHKTIDARGVNVHIAYGAGLSIQFSQNVIIHGLHIHHIVAASGGIIRDSYNHVGIRTVSDGDGVSIFGSSNIWLDHLSMSSCQDGLIDAIQGSTAITVSNCHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKKITNRNYATESVWKTWTWRSEGDLMMNGAFFVQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGALNCYLGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 56526653 56527966 - Tan0020904.1 Tan07g1259 758790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1259 437 SUPERFAMILY Pectin lyase-like 88 428 IPR011050 -
Tan07g1259 437 Gene3D - 87 430 IPR012334 -
Tan07g1259 437 Pfam Pectate lyase 183 353 IPR002022 -
Tan07g1259 437 SMART amb_all 162 359 IPR002022 -
Tan07g1259 437 Pfam Pectate lyase, N terminus 24 77 IPR007524 GO:0030570(InterPro)
Tan07g1259 437 PANTHER PECTATE LYASE 18-RELATED 14 432 IPR045032 GO:0030570(InterPro)
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Tan07g1259 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2804 Tan-Chr1:54984656 Tan07g1259 Tan-Chr7:56526653 1.70E-187 dispersed
Tan04g1114 Tan-Chr4:10207175 Tan07g1259 Tan-Chr7:56526653 4.10E-173 dispersed
Tan07g1259 Tan-Chr7:56526653 Tan07g2128 Tan-Chr7:72582443 8.60E-131 dispersed
Tan07g1259 Tan-Chr7:56526653 Tan07g1262 Tan-Chr7:56607071 1.90E-242 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1259 K01728 - csv:101202789 782.711