Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1262 ATGGATGGTTGTAGAATGATCAAGGTTGTGATGGCGCTGGCTTGCATGGCTGTGATGCTGCCAACTCTCAGAGCTGGAATTGCTGAATTTGATGAGTATTTGCTGCAAAAAGCTGATGAAGCGAAACAAGCTTCTCTTGAGGCGTTCCACCCTGACCCCATGAATGTGACTGAGCATTTGAACAATCAAGTTCATTTAGCCTTAGAGGGATCAGGGAATAGTAGTAGGAGGAGCCTGAGGAAATACAACGGCCCATGTTTGGCTACAAACCCAATCGACCGCTGCTGGCGATGTGACCCAAACTGGGCCAAGAATCGTAAGAAGCTTGCCTCTTGTGTGTTGGGTTTTGGCCGAAAAACCACCGGTGGGAAAAGAGGAAAAATCTACACAGTGATAGACCCGTCTGACAACGACGTCGTAAACCCTAAACCCGGAACCCTAAGACACGCAGCAATCCAAAAGCGACCGCTGTGGATCATATTTGGGCGGAGTATGATCATCAAGCTGTCGAAAGAGCTGTTAGTGGCGAGCCACAAGACCATCGATGCACGTGGAAAAAATATCCACATAGCATATGGAGCTGGACTTAGCGTTCAATTCTCGACGAATGTGATAATCCACGGGCTTCACATCCACCACGTTGTAGCAACCAGCGGTGGCATAATTCGAGACGCATACAACCATGTTGGGATTCGAACGGTGAGCGATGGAGATGGTATCTCTATCTTTGGATCCTCCAATATCTGGCTTGATCATCTCTCAATGTCCAACTGCCAGGATGGACTAATCGACGCAATCCAAGGTTCGACTGCAATCACAGTCTCTAACTGTCATTTCACTCACCATAACGACGTGATGTTGTTCGGTGCAAGTGATTCGTACCAAGGCGATTCCATCATGCAAGTCACTGTGGCATTCAACCATTTTGGGAAAGGGTTGATTCAGAGAATGCCCAGATGCCGATGGGGTTTCTTCCATGTCGTCAACAATGATTACACTCATTGGCTAATGTACGCCATTGGTGGAAGCCAACATCCAACGATTATCAGTCAGGGGAATCGTTTCATTGCGCCACCAAATCCTGCTGCCAGACAGATTACAAACAGAAACTATGCAACTGAGAGTGTGTGGAGAACATGGACATGGAGATCAGAAGGGGATCTCATGATGAATGGTGCCTATTTTGTTCAGTCTGGAAATCCAAGCAAAAGAAGGTCATACAGCAGATTTGACATGATCAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTTACACGTTTCGCTGGCGCCCTCAACTGTTATCTTGGTCGACCATGCTAA 1320 47.27 MDGCRMIKVVMALACMAVMLPTLRAGIAEFDEYLLQKADEAKQASLEAFHPDPMNVTEHLNNQVHLALEGSGNSSRRSLRKYNGPCLATNPIDRCWRCDPNWAKNRKKLASCVLGFGRKTTGGKRGKIYTVIDPSDNDVVNPKPGTLRHAAIQKRPLWIIFGRSMIIKLSKELLVASHKTIDARGKNIHIAYGAGLSVQFSTNVIIHGLHIHHVVATSGGIIRDAYNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNCHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYATESVWRTWTWRSEGDLMMNGAYFVQSGNPSKRRSYSRFDMIKAKPGTFVRRLTRFAGALNCYLGRPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 56607071 56608390 + Tan0010705.1 Tan07g1262 758793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1262 439 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570(InterPro)
Tan07g1262 439 Gene3D - 89 432 IPR012334 -
Tan07g1262 439 Pfam Pectate lyase 195 355 IPR002022 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Tan07g1262 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Tan07g1262 439 PANTHER PECTATE LYASE 18-RELATED 19 434 IPR045032 GO:0030570(InterPro)
Tan07g1262 439 SUPERFAMILY Pectin lyase-like 90 430 IPR011050 -
Tan07g1262 439 SMART amb_all 164 361 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2803 Tan-Chr1:54903199 Tan07g1262 Tan-Chr7:56607071 6.10E-185 dispersed
Tan01g3372 Tan-Chr1:94151149 Tan07g1262 Tan-Chr7:56607071 1.10E-231 dispersed
Tan05g2084 Tan-Chr5:71263800 Tan07g1262 Tan-Chr7:56607071 1.70E-174 dispersed
Tan07g1262 Tan-Chr7:56607071 Tan07g2128 Tan-Chr7:72582443 2.70E-132 dispersed
Tan07g1259 Tan-Chr7:56526653 Tan07g1262 Tan-Chr7:56607071 1.90E-242 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1262 K01728 - csv:101202789 793.112