Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1336 ATGAATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCCGGCACCACCAAGGCCGGCGCCACAGACGAACACCCGAATTATATCCTCCTCCGCTACCAAATCCTCGACCCTGACAGCGACATCGTCGCGCAATGGAACCGCGTGTTCCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTTGGCGGACCGGCCTGCCTGACGTCGGAGATGAAGCTGGGAGTGGTGATCACGTTCTTCAGAACGGTGATGGATCTGTTCTTCTTACTGCACATGGTTCTCAAGTTTCGAACGGCGTATGTGGCTCCGAGTTCTAGGGTTTTTGGAAGGGGAGAGTTGGTTATGGATGCCAGAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTCGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCGACAAGAAACTCAAGAGTGGATCATGCCAACAACACAATCGCTCTCCTTGTTCTTCTTCAATATGTTCCAAGGTTGTTCCTCATCTTCCCTCTTAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTATAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATCTATTGTCCATAGGGAGACAGTTCTCTTGTTGGAAAACAGAATGTGCAAAGGAAAATGCCTCAAAAGTTATAACATGTCTTCCCAGCTTCTTGGATTGTTACAGTTTGAATCGAACAGACCGACAATATTGGCTCAATGTCACTCATGTTACTTCTAAATGCGATCCTAGGAATGAAAATATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACTAATGATGTTGCTTCCTCACATTTCATTGCCAAGTACTTTTATTGCCTTTGGTGGGGCCTCAGAAATTTAAGTTCATATGGACAAACTTTGGATACTACAACGTATATTGGCGAGACATTATTTTGCATATCAACCTGCATATTTGGCTTGATACTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAATAAGACTTGAGGAATGGAGGATAAAGCGAAGGGACACTGAAGAATGGATGAGACGTCGCCAATTACCTCCCGATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGTTGGCCACGAGAGGAGTCAATGAAGAATCCATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCCATATGCGAGCGGCTGGTGTCATCCTTGTGTACTCAAGGAACGTACATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCCACAACAAATGGCGGCCGATCAGGATTCTTCAATTCCATCACACTGAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCCTTGATGCCAAGTTCCAGTTTGAATATGCCTTCTTCTACTCGAACCGTCCGAGCGCTTACAGAAGTCGAAGCGTTTGCTCTTCGAGCCGAGGACCTCAAGTTCGTCGCTGGTCAATTCAAACGCCTACATAGCAAGAAACTTCAACATGCCTTTAGATATTATTCCCATCAATGGAGGACATGGGGAGCTTGCTTGATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGACATCAGCATTGAGTGAGAGCTTACGCTACATAGATTCGATAGAACAAGATAACGAATACGATATTGAGCTAGCAGAAGAAAGTTATAACGATGACGATGACAGCGACAACGACATGTCTTCTCCAGACTACATGAACAAAAGTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCAAACACTAGAAGAGGAGTTAATCAAAGGGGACAAACATCCAAACCTTCCAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCCATGGATGGATGA 2133 44.73 MNRIIQSPASKFRPFRRQLIGSSSDSGTTKAGATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEMKLGVVITFFRTVMDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKTECAKENASKVITCLPSFLDCYSLNRTDRQYWLNVTHVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTIRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKTSALSESLRYIDSIEQDNEYDIELAEESYNDDDDSDNDMSSPDYMNKSQHLGATILASKFAANTRRGVNQRGQTSKPSSLKMPKLFKPDEPDFSMDG 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 62795370 62801580 + Tan0000364.1 Tan07g1336 758867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1336 710 MobiDBLite consensus disorder prediction 676 693 - -
Tan07g1336 710 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Tan07g1336 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 692 - -
Tan07g1336 710 CDD CAP_ED 456 587 IPR000595 -
Tan07g1336 710 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Tan07g1336 710 SMART cnmp_10 456 587 IPR000595 -
Tan07g1336 710 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Tan07g1336 710 Gene3D Jelly Rolls 454 574 IPR014710 -
Tan07g1336 710 MobiDBLite consensus disorder prediction 675 710 - -
Tan07g1336 710 Pfam Ion transport protein 58 382 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan07g1336 710 Gene3D - 61 381 - -
Tan07g1336 710 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
Tan07g1336 710 MobiDBLite consensus disorder prediction 696 710 - -
Tan07g1336 710 Gene3D Helix hairpin bin 384 447 - -
Tan07g1336 710 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Tan07g1336 710 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1336 Tan-Chr7:62795370 Tan08g0725 Tan-Chr8:7495317 1.10E-194 dispersed
Tan01g0444 Tan-Chr1:4120342 Tan07g1336 Tan-Chr7:62795370 6.00E-99 transposed
Tan09g1637 Tan-Chr9:68010666 Tan07g1336 Tan-Chr7:62795370 4.20E-247 transposed
Tan11g0453 Tan-Chr11:3663641 Tan07g1336 Tan-Chr7:62795370 4.90E-104 transposed
Tan07g1336 Tan-Chr7:62795370 Tan09g2232 Tan-Chr9:72293772 1.50E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1336 K05391 - csv:101216651 1313.9