Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1342 ATGGAATCTGGCCGGTACTTGTTCAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCAGTGGTGGCGATCCTTTTCTGCGAGGAGGAAGAACAATGATGAGAATGAGCATGCAAGAAAGTCCAAAGGGGCAACCATTTTATAGATGCCCCGACGATCTTTACGACGATGAATATTACGATGAGCTTTACCCCGAGAAGAAGCGTCGTTTGACCCACGATCAGGTTCAAATGCTGGAAAAGAGCTTTGAGGAAGAGAATAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAACAAGCTGAGGCTGCAACCAAGGCAAGTGGCTGTGTGGTTCCAAAACCGTCGTGCTCGGTGGAAGACCAAGCAACTTGAAAGGGACTATGATGTTCTTAAAGTTTCATATGATTTGCTTATCTCAAACTATGACTTGATCCTCAAAGAGAATGCACTGCTTAAATCTGAGGTAGCATCCTTAACAGAGAAATGTATAGCTAAAGAGCTGGATGGAGGAGAAGCACCAATTCCATGTATAACATCAGAGCCTCTTCTAGCAGACATTGCCAACATCTCTGCTCCACACTCCAGCAGAAAGGTTGAAGATCGTCTCAGTTCCGGGAGCGATGGCAGTGCAGTGATCGACGATAATTGTCTGCAACTCATCGACAGCGGTGATTCTTACTTCCCGAGCAACGAATACCCGGAATGTGTACCTTTGCCTACCGGGTTGCAAATGGAACATGAAGATAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGTAACAAACCAACAGCATCAGGAGGGAGGGCCTCCAGCTTGGTGGGCATGGACTTAG 855 47.25 MESGRYLFNPPACGGNMLYLGGASGGDPFLRGGRTMMRMSMQESPKGQPFYRCPDDLYDDEYYDELYPEKKRRLTHDQVQMLEKSFEEENKLEPERKSQLANKLRLQPRQVAVWFQNRRARWKTKQLERDYDVLKVSYDLLISNYDLILKENALLKSEVASLTEKCIAKELDGGEAPIPCITSEPLLADIANISAPHSSRKVEDRLSSGSDGSAVIDDNCLQLIDSGDSYFPSNEYPECVPLPTGLQMEHEDRNDNSNYLFSDMFAVTNQQHQEGGPPAWWAWT 284
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 62977400 62981123 - Tan0013247.1 Tan07g1342 758873
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1342 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 193 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan07g1342 284 Pfam Homeodomain 70 123 IPR001356 GO:0003677(InterPro)
Tan07g1342 284 SUPERFAMILY Homeodomain-like 67 127 IPR009057 -
Tan07g1342 284 CDD homeodomain 70 126 IPR001356 GO:0003677(InterPro)
Tan07g1342 284 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677(InterPro)
Tan07g1342 284 SMART HOX_1 68 129 IPR001356 GO:0003677(InterPro)
Tan07g1342 284 FunFam homeobox-leucine zipper protein ATHB-6-like 73 119 - -
Tan07g1342 284 Pfam Homeobox associated leucine zipper 125 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan07g1342 284 Gene3D - 68 131 - -
Tan07g1342 284 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2080 Tan-Chr5:71222985 Tan07g1342 Tan-Chr7:62977400 1.90E-27 dispersed
Tan05g2081 Tan-Chr5:71222985 Tan07g1342 Tan-Chr7:62977400 1.90E-27 dispersed
Tan07g1342 Tan-Chr7:62977400 Tan11g0529 Tan-Chr11:4582562 3.60E-21 dispersed
Tan11g0610 Tan-Chr11:5408743 Tan07g1342 Tan-Chr7:62977400 8.40E-55 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27965 PF00046 Homeodomain 2.50E-17 CL0123 Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1342 K09338 - csv:101212142 463.381