Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan07g1342 | ATGGAATCTGGCCGGTACTTGTTCAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCAGTGGTGGCGATCCTTTTCTGCGAGGAGGAAGAACAATGATGAGAATGAGCATGCAAGAAAGTCCAAAGGGGCAACCATTTTATAGATGCCCCGACGATCTTTACGACGATGAATATTACGATGAGCTTTACCCCGAGAAGAAGCGTCGTTTGACCCACGATCAGGTTCAAATGCTGGAAAAGAGCTTTGAGGAAGAGAATAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAACAAGCTGAGGCTGCAACCAAGGCAAGTGGCTGTGTGGTTCCAAAACCGTCGTGCTCGGTGGAAGACCAAGCAACTTGAAAGGGACTATGATGTTCTTAAAGTTTCATATGATTTGCTTATCTCAAACTATGACTTGATCCTCAAAGAGAATGCACTGCTTAAATCTGAGGTAGCATCCTTAACAGAGAAATGTATAGCTAAAGAGCTGGATGGAGGAGAAGCACCAATTCCATGTATAACATCAGAGCCTCTTCTAGCAGACATTGCCAACATCTCTGCTCCACACTCCAGCAGAAAGGTTGAAGATCGTCTCAGTTCCGGGAGCGATGGCAGTGCAGTGATCGACGATAATTGTCTGCAACTCATCGACAGCGGTGATTCTTACTTCCCGAGCAACGAATACCCGGAATGTGTACCTTTGCCTACCGGGTTGCAAATGGAACATGAAGATAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGTAACAAACCAACAGCATCAGGAGGGAGGGCCTCCAGCTTGGTGGGCATGGACTTAG | 855 | 47.25 | MESGRYLFNPPACGGNMLYLGGASGGDPFLRGGRTMMRMSMQESPKGQPFYRCPDDLYDDEYYDELYPEKKRRLTHDQVQMLEKSFEEENKLEPERKSQLANKLRLQPRQVAVWFQNRRARWKTKQLERDYDVLKVSYDLLISNYDLILKENALLKSEVASLTEKCIAKELDGGEAPIPCITSEPLLADIANISAPHSSRKVEDRLSSGSDGSAVIDDNCLQLIDSGDSYFPSNEYPECVPLPTGLQMEHEDRNDNSNYLFSDMFAVTNQQHQEGGPPAWWAWT | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 62977400 | 62981123 | - | Tan0013247.1 | Tan07g1342 | 758873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan07g1342 | 284 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 53 | 193 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Tan07g1342 | 284 | Pfam | Homeodomain | 70 | 123 | IPR001356 | GO:0003677(InterPro) | |
Tan07g1342 | 284 | SUPERFAMILY | Homeodomain-like | 67 | 127 | IPR009057 | - | |
Tan07g1342 | 284 | CDD | homeodomain | 70 | 126 | IPR001356 | GO:0003677(InterPro) | |
Tan07g1342 | 284 | ProSiteProfiles | 'Homeobox' domain profile. | 65 | 125 | IPR001356 | GO:0003677(InterPro) | |
Tan07g1342 | 284 | SMART | HOX_1 | 68 | 129 | IPR001356 | GO:0003677(InterPro) | |
Tan07g1342 | 284 | FunFam | homeobox-leucine zipper protein ATHB-6-like | 73 | 119 | - | - | |
Tan07g1342 | 284 | Pfam | Homeobox associated leucine zipper | 125 | 165 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan07g1342 | 284 | Gene3D | - | 68 | 131 | - | - | |
Tan07g1342 | 284 | ProSitePatterns | 'Homeobox' domain signature. | 100 | 123 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g2080 | Tan-Chr5:71222985 | Tan07g1342 | Tan-Chr7:62977400 | 1.90E-27 | dispersed | |
Tan05g2081 | Tan-Chr5:71222985 | Tan07g1342 | Tan-Chr7:62977400 | 1.90E-27 | dispersed | |
Tan07g1342 | Tan-Chr7:62977400 | Tan11g0529 | Tan-Chr11:4582562 | 3.60E-21 | dispersed | |
Tan11g0610 | Tan-Chr11:5408743 | Tan07g1342 | Tan-Chr7:62977400 | 8.40E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27965 | PF00046 | Homeodomain | 2.50E-17 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan07g1342 | K09338 | - | csv:101212142 | 463.381 |