Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1394 ATGGCGGGTCTCGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAAGGGTTTTCTATGGATTCCCCTGTGAACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGAGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCCGACGATTCGGGGAGTAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCACCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCCGAGGGTCTAGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAATACATGGATGGAGGGTCATTGGCCGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTTCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGACATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGGGAAGCAAAAATTACAGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTCGGAACTGTCACATACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTATTTGAGTGTGGTACTGGCGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCTCCATCCCCATCAAAACAGAAGTTTTCGCCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTTCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCGTTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCTACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCCGACATTCGAAGTACATTAGCGGGGGACTGGCCTCTTGAAAAACTAGTTCATGTTGTTGAAAAACTCCAATGTCGAGCTCACGGTCGAGATGGAGTTGCCATAAGGGTGTCTGGATCCTTCATCATTGGGAACCAGTTCCTCATATGCGGAGACGGCGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTCTCCATCGACATGGCCAGTAAGAAAATGGGATCCTTCCGGGAGCAGCTGATCATCGAACCAAGCAACCTCATTGGTCGGTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 43.29 MAGLEELKKKLTPLFDAEKGFSMDSPVNPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYNESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDMASKKMGSFREQLIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 64829880 64836267 + Tan0004156.1 Tan07g1394 758925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1394 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Tan07g1394 518 Gene3D Transferase(Phosphotransferase) domain 1 159 361 - -
Tan07g1394 518 Gene3D - 362 517 - -
Tan07g1394 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan07g1394 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Tan07g1394 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan07g1394 518 CDD PKc_MAPKK_plant_like 84 343 - -
Tan07g1394 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Tan07g1394 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Tan07g1394 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Tan07g1394 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan07g1394 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 63 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan07g1394 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Tan07g1394 518 SUPERFAMILY Protein kinase-like (PK-like) 85 368 IPR011009 -
Tan07g1394 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Tan07g1394 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1394 K20607 - - csv:101217978 999.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1394 Tan-Chr7:64829880 Tan08g0109 Tan-Chr8:951011 1.20E-65 dispersed
Tan07g1394 Tan-Chr7:64829880 Tan09g1114 Tan-Chr9:63452776 9.70E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1114 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 1.6e-135 479.9
Tan08g0048 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.9 5.0e-126 448.4
Tan08g0109 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 3.6e-108 389.0
Tan09g1114 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.9 7.6e-135 477.6
Tan08g0048 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 64.3 1.7e-118 423.3
Tan08g0109 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.2e-110 396.4
Tan07g1394 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.7 3.5e-229 791.6
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.0e-129 459.1
Tan05g2167 . 47 310 MAP Kinase Kinase Gene Family AT1G51660 55.7 9.6e-83 304.7
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.8 4.9e-129 458.4
Tan05g2167 . 41 312 MAP Kinase Kinase Gene Family AT3G21220 54.8 9.7e-85 311.2
Tan08g0109 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Tan09g1114 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 1.2e-119 427.2
Tan08g0048 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 1.9e-107 386.7
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 63.0 1.9e-108 389.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.9e-76 283.5
Tan05g2167 . 1 298 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.1e-81 300.8
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.8e-114 409.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G73500 52.8 3.0e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67875 PF00069 Pkinase 1.70E-59 CL0016 Tan PK