Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan07g1616 | ATGGGCTTCCCTGCAAGCTACACCGAGCTTCTTCTCCCAAAGCTCTTCATCCACGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTTATCTCCCTTCTATTTCGCCTTCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCATCCCGATTCCTTCCCCACAGGGCCTTTGACCGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGTGAGATTCTCCCCGTCGTCAAGTTCTCCGACCTTCTCGACCCACCGGAGAGCTGCGCTGTCTGTCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCCAACTGCCGCCACATCTTCCACCGCGGATGCCTCGATCGCTGGATCGGTTACGGCCAGAGGACCTGTCCGCTCTGCCGGACGGTGTTTATTCCCGCCGATTTGCGGACCGGTGGTTGTAATTCTGACGATAGGCTTTGGGAGGATTCGGAAATAATCTTCGAACCACTTCACACCGATTCTTCTTCGTCGCCGACTCTTCTCACCGCTGAAGCTAAGATTGAGGAGTGGGGCAATATGATGAACAATATTCTAGTTGATGGTATTAAATTCAAGTTTAAAGTTGGATGGGATGAAAATATAGAATATCTAGAATTAGATGCTTCAAAATTCGGAATAATCATGATATTGGTACAATTTCTAAATGCTTTATGGTTTAATTTTTGGCTCATTTTTTTGTTTTCGTCTAATGGTACTGTTAATTTTTAA | 750 | 48.93 | MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPLTDLDPLSAAVLREILPVVKFSDLLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRTGGCNSDDRLWEDSEIIFEPLHTDSSSSPTLLTAEAKIEEWGNMMNNILVDGIKFKFKVGWDENIEYLELDASKFGIIMILVQFLNALWFNFWLIFLFSSNGTVNF | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 67566744 | 67568380 | + | Tan0004856.1 | Tan07g1616 | 759147 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan07g1616 | 249 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 146 | - | - | |
| Tan07g1616 | 249 | CDD | RING-H2_RHA1-like | 91 | 137 | - | - | |
| Tan07g1616 | 249 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Tan07g1616 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Tan07g1616 | 249 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Tan07g1616 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Tan07g1616 | 249 | SUPERFAMILY | RING/U-box | 74 | 139 | - | - | |
| Tan07g1616 | 249 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan07g1616 | Tan-Chr7:67566744 | Tan03g0676 | Tan-Chr3:62269030 | 1.70E-06 | dispersed | |
| Tan03g2086 | Tan-Chr3:75723132 | Tan07g1616 | Tan-Chr7:67566744 | 6.70E-11 | transposed | |
| Tan04g1456 | Tan-Chr4:17499213 | Tan07g1616 | Tan-Chr7:67566744 | 5.60E-06 | transposed | |
| Tan05g1648 | Tan-Chr5:44386827 | Tan07g1616 | Tan-Chr7:67566744 | 1.90E-34 | transposed | |
| Tan06g2001 | Tan-Chr6:64434675 | Tan07g1616 | Tan-Chr7:67566744 | 8.50E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan07g1616 | K16281 | - | csv:101215533 | 313.153 |