Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1719 ATGCAAGAACCTGGGTTGGGAATGATGACGACTGCTGGTGGGTCTAGTGGTGCCCTTAGCGGCGACGTTTCGGTCTCCGGCGAGGGGGTTCACAACGGCCAACTCAAGGCGGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCGGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCTCAGTTGGCTCAATCGCACCATGTTTTGCGCTCTTATGCTTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCATGAGCGCCAAGAACTCGACAATTTTCTGGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGAGCAGCTTCAGCAACATGTGAGAGTCCATGCAGTGGAAGCTGTTATGGCTTGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGAACCGGTGCAACGATGTCGGACGACGACGACGATGTTCCGATCGACTTTTCGCTTGATCAATCTGGTGCCGACGCTCACGACATGATGGGGTTCGGGCCGCTGCTTCCGACCGAATCCGAAAGGTCATTGATGGAGAGGGTTCGGCAGGAACTGAAGATTGAGCTAAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAAGAGATATTAAGAAAAAGAAGGGCAGGGAAGTTACCTGGTGATACAACCACAGTTTTGAAGAACTGGTGGCAGCAACATTCCAAGTGGCCTTACCCAACTGAAGACGACAAGGCGAAGCTGGTCGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAATTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCCAAGCGCAAGAGATAA 903 49.06 MQEPGLGMMTTAGGSSGALSGDVSVSGEGVHNGQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPMIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDDDDVPIDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68538804 68543570 - Tan0010256.1 Tan07g1719 759250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1719 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677(InterPro)
Tan07g1719 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Tan07g1719 300 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan07g1719 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677(InterPro)
Tan07g1719 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan07g1719 300 FunFam homeobox protein knotted-1-like 3 isoform X1 224 285 - -
Tan07g1719 300 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan07g1719 300 CDD homeodomain 226 287 IPR001356 GO:0003677(InterPro)
Tan07g1719 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan07g1719 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan07g1719 300 SMART HOX_1 225 290 IPR001356 GO:0003677(InterPro)
Tan07g1719 300 Gene3D - 222 296 - -
Tan07g1719 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2744 Tan-Chr2:95684812 Tan07g1719 Tan-Chr7:68538804 2.30E-105 dispersed
Tan02g2745 Tan-Chr2:95684812 Tan07g1719 Tan-Chr7:68538804 3.60E-106 dispersed
Tan04g1268 Tan-Chr4:12193149 Tan07g1719 Tan-Chr7:68538804 2.50E-26 dispersed
Tan07g1719 Tan-Chr7:68538804 Tan07g1721 Tan-Chr7:68538804 3.30E-113 dispersed
Tan07g1719 Tan-Chr7:68538804 Tan07g1720 Tan-Chr7:68538804 3.70E-141 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27989 PF03791 KNOX2 5.20E-18 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1719 - - - 0.0