Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1724 ATGGTGAGAGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGACTGCTCAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGCCCAGTAACAACCAAGCTTTAGAAGATATGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAACTATTGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGTTGCAGCAGCTTGAGAGACAAATTGAAAGAAGCTTGAGCAAAATTAGGTCAAGAAAGTTTCAATTGCTCAAGGAAGAAATTTTGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGAACTGCAAATGAAGGTTAGAACTGAATCATCAAAAAAACCAGAAACCAGCCACCATAGATCAGAATCAAACCAAGAGACTATGGATGTGGAAACTGAACTGTTCATAGGACCCCCAGAAAGAAGAAGCAGCAATAATGGCTTCCTGTAA 648 39.04 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMPSNNQALEDMQLEKEYDSFSMTKKLQHLEVCKRKLLGDGLDLCSIEELQQLERQIERSLSKIRSRKFQLLKEEILKLKEEEKMLLEENAELQMKVRTESSKKPETSHHRSESNQETMDVETELFIGPPERRSSNNGFL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68595332 68601993 + Tan0009583.1 Tan07g1724 759255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1724 215 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan07g1724 215 MobiDBLite consensus disorder prediction 172 193 - -
Tan07g1724 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan07g1724 215 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 MobiDBLite consensus disorder prediction 172 215 - -
Tan07g1724 215 Coils Coil 122 142 - -
Tan07g1724 215 Pfam K-box region 88 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan07g1724 215 Coils Coil 144 171 - -
Tan07g1724 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan07g1724 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan07g1724 215 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1724 Tan-Chr7:68595332 Tan07g1726 Tan-Chr7:68595332 9.60E-83 dispersed
Tan07g1724 Tan-Chr7:68595332 Tan07g1725 Tan-Chr7:68595332 9.60E-83 tandem
Tan01g0311 Tan-Chr1:2653098 Tan07g1724 Tan-Chr7:68595332 6.00E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27990 PF01486 K-box 1.60E-20 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1724 - - - 0.0