Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1730 ATGGCTTCTTTTTCAGGCTTCAACTTCTTGGTGATGGCATTGGTTTTGGTCATCTTCAGTACCAGATCAACGCTGGCTGTGTTCCAACCAAGCCCGTGGAAGCTCGCTCATGCTACCTTTTATGGTGACGAAACTGCATCCGCTACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAATGGGTATGGAACTGATACAGTGGCATTGAGCTCGACAGTGTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGCGTGCAGTCGAAGGCGTGCTATGCGAACGTGCCGTTCACCACCGTGACGGCGACCAACCTGTGCCCGCCAAATTGGTCGCAGGACTCAAACGCCGGCGGCTGGTGCAACCCACCAAGAGTTCATTTCGACATGGCTAAGCCCGCCTTCATGAAGATCGCTTGGTGGAAGGCCGGAATTGTCCCTGTTCAATACCGCAGGGTTCCATGCATAAGAAAAGGAGGTGTTCGATTCAGCTTCCAAGGAAATGGTTACTGGTTATTAGTGTATGTAATGAACGTAGGAGGAGGAGGCGATGTGTATTCAATGGCAGTGAAAGGAAGCAAAACTGGATGGCTAACAATGAGCCATAACTGGGGAGCTTCATATCAAGCTTTTGCCTCATTGGGTGGTCAATCCCTCTCTTTTAGAATCACTTCTTTCACAACCAGAGAAACCATTACCCTTTGGAATGTCATTCCTGCAAATTGGCAAGTTGGCTTGACTTATAATTCTAATCTCAACTTCCGTTGA 780 48.21 MASFSGFNFLVMALVLVIFSTRSTLAVFQPSPWKLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTVFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRVPCIRKGGVRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWLTMSHNWGASYQAFASLGGQSLSFRITSFTTRETITLWNVIPANWQVGLTYNSNLNFR 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68667309 68669974 - Tan0022163.1 Tan07g1730 759261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1730 259 SMART dpbb_1 68 154 IPR007112 -
Tan07g1730 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Tan07g1730 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Tan07g1730 259 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Tan07g1730 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PANTHER EXPANSIN-A15 13 254 IPR002963 GO:0009664(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Tan07g1730 259 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
Tan07g1730 259 Gene3D - 18 159 IPR036908 -
Tan07g1730 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Tan07g1730 259 Gene3D - 164 259 IPR036749 -
Tan07g1730 259 CDD DPBB_EXPA_N 32 159 - -
Tan07g1730 259 Pfam Expansin C-terminal domain 165 243 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1730 Tan-Chr7:68667309 Tan11g0699 Tan-Chr11:6079714 9.80E-74 dispersed
Tan01g1950 Tan-Chr1:21473742 Tan07g1730 Tan-Chr7:68667309 2.90E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1730 - - - 0.0