Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1851 ATGTCATCCTCTTCTTCTTCTCCTACTCCTCATCCTCATCCTACTTCAACTACTACTACTACTACTACTACTACTCAGCAGCAGCTGGACCACCACCTTCCCTCCGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTTCTGCCTGTCAACATGCGTGGCCTGCTTTTGCCTTCTGCTAATCAGTTTCATCAGCTTGGTCACTCTTTCTTTTCTCCTTCTCACAACATTCTGGAAAATATCCCAACCCCAAATTCCAATTATCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGACCTCCCTAGGCCACCAGCCATCAACAGACCTCCGGAGAAGAGACAGCGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGTATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGCGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 714 47.76 MSSSSSSPTPHPHPTSTTTTTTTTTQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNNFGMPSRGVTDDLPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGGDQNVLMKDNGFYASANVGVSHF 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70058851 70060787 - Tan0021910.1 Tan07g1851 759382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1851 237 Gene3D High mobility group box domain 141 195 IPR036910 -
Tan07g1851 237 PANTHER PROTEIN YABBY 6-RELATED 36 207 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Tan07g1851 237 FunFam Axial regulator YABBY 143 214 - -
Tan07g1851 237 MobiDBLite consensus disorder prediction 1 29 - -
Tan07g1851 237 Pfam YABBY protein 36 198 IPR006780 GO:0007275(InterPro)
Tan07g1851 237 CDD HMG-box_SF 152 188 - -
Tan07g1851 237 SUPERFAMILY HMG-box 143 191 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2003 Tan-Chr1:22336772 Tan07g1851 Tan-Chr7:70058851 2.30E-76 dispersed
Tan04g1253 Tan-Chr4:11858790 Tan07g1851 Tan-Chr7:70058851 2.20E-33 dispersed
Tan07g1851 Tan-Chr7:70058851 Tan09g1419 Tan-Chr9:66313511 1.40E-42 dispersed
Tan07g1851 Tan-Chr7:70058851 Tan08g0251 Tan-Chr8:2246320 8.20E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28000 PF04690 YABBY 1.60E-70 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1851 K25796 - csv:101214748 412.535