Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1851 ATGTCATCCTCTTCTTCTTCTCCTACTCCTCATCCTCATCCTACTTCAACTACTACTACTACTACTACTACTACTCAGCAGCAGCTGGACCACCACCTTCCCTCCGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTTCTGCCTGTCAACATGCGTGGCCTGCTTTTGCCTTCTGCTAATCAGTTTCATCAGCTTGGTCACTCTTTCTTTTCTCCTTCTCACAACATTCTGGAAAATATCCCAACCCCAAATTCCAATTATCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGACCTCCCTAGGCCACCAGCCATCAACAGACCTCCGGAGAAGAGACAGCGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGTATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGCGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 714 47.76 MSSSSSSPTPHPHPTSTTTTTTTTTQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNNFGMPSRGVTDDLPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGGDQNVLMKDNGFYASANVGVSHF 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70058851 70060787 - Tan0021910.1 Tan07g1851 759382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1851 237 Gene3D High mobility group box domain 141 195 IPR036910 -
Tan07g1851 237 PANTHER PROTEIN YABBY 6-RELATED 36 207 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Tan07g1851 237 FunFam Axial regulator YABBY 143 214 - -
Tan07g1851 237 MobiDBLite consensus disorder prediction 1 29 - -
Tan07g1851 237 Pfam YABBY protein 36 198 IPR006780 GO:0007275(InterPro)
Tan07g1851 237 CDD HMG-box_SF 152 188 - -
Tan07g1851 237 SUPERFAMILY HMG-box 143 191 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1851 K25796 - - csv:101214748 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2003 Tan-Chr1:22336772 Tan07g1851 Tan-Chr7:70058851 2.30E-76 dispersed
Tan04g1253 Tan-Chr4:11858790 Tan07g1851 Tan-Chr7:70058851 2.20E-33 dispersed
Tan07g1851 Tan-Chr7:70058851 Tan09g1419 Tan-Chr9:66313511 1.40E-42 dispersed
Tan07g1851 Tan-Chr7:70058851 Tan08g0251 Tan-Chr8:2246320 8.20E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28000 PF04690 YABBY 1.60E-70 CL0114 Tan TF