Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1908 ATGGTGGACTACAGTTTGCCGGTATCGAAGAGAACGAGGCTGAGGAGAGCAATGGCTGGAAAGGAGCATTTGGAGCAGAGGAAGAAGCGGAGGAAGAAGATCAGGGCGGATTCCGCCAGTGATAATGTTCGTGGTCAAGTTTCCAGCGGAGGATGTGATGGAGGTAGGAGGGTTAATTCTTCTGAAAATTGTAGTGTAAATCGTAAAATAGAGGTGGGGAAAGTGGGTTTAAGTGTTGATAGTGGGGAGGAGAGTGTGGAGGAGATTGATGCAGTTACATTTGGTAGAGAAGGTGGGGATTCGGTCACATTTGTGGGTTCTGAGAGTTCGGGGCTGAAGAATGTCAAAGGATTTAGTGCGAAGGGGATTGAGAAGGGGAATGTTGATTTAATCGATTTAGAGGATGATGTGATTTTGATTGACGAGGAGGGTTTTGATTCTGTGAATTCTAACTGTTCGATTTCTAAGTCGGCTTCTGCTGCTGCGAAGGTCGGGGATTTCGTTTGCCTTGATTTGGATAATGAAGATGGTAGTAGTGGCTTGATTTCATCTGGAAAGGGAAAGGGTGCTTTAGAGATATCTCCCAATAAAAGCATTGGGGAAAGTAATTGCTTGAACTCTAATGGTTGCGAGAGTGGTGGTTGCTCATACAGCACTGAGCCCACGTGTTGTTCTGATGATGCTGTTGATGAGTCCGCTGAATCGGAAGCATCATCAAGTGAAGAGGAGTATGATGACTCGAGTGATGGGACTTATGAATTAGAAGAATCAGACGAGTCAAGATCAGAGTCCTCTGGTTCAGAAAATGGGAAGAATAATAGAAGTTACTGTGCAGAAGCAGGAAGTAGAAGGGAAAGAAGGAAAAGGGTAAAAATTATTGAAGGTGGACTAAAAAGGAGGAAAGCTTATGGATTGGACATATTGGTTGATCATGATGAGGACGGACATAACTCCAATCACGGAAATGGAAATGTTAAGGTTGGTGAGCAGGTTAATTGTGTTGCACGAAGAACTCGCTCACGCTATGTTTTGGGGGTTAAAAAGATAAATACTGATCTTGGAACTGTCAGTCAGCCACTCTGTGTTGACGAGGAAGGGTCAGATTTTCACGATGAGAAAGAATTAGATTCTTTATCAAGACATGACAGTAGAGATTCTTGTGATAGTGATGGTGATAGTGATAGTACTACTGATGATGAAATTTACAAGCCAAGGGTCTGGAGTAGTAGTAGTAAAAAGAGAACTGAGTTCAACAATCAAAGTGATGATGATATCTTATCAAAAAAAGAAGATGATGATATAAACAAGGTTGAGAGTTTTCATGTGGGGAGTAAACTTTGGGATAGTAAAAGTTTACCTGAAACAAATAAACGCACCCAGAGTGAAGATTGTGAAAATTTTCAGAAGGTTCACCCAAAGAATTGTGAAGATTTTCAGAAGGTTCCCCCAAAGAATTGTCATAAGTTTGACAATATTTTTAAAACAAAGGGTCGTGCTTTGAAAAGTCTTGATGTTTTCAATATTCTTATAGATTCCATAATTGCAGACAAAGAACTGCCTTCAGATGAGTTAGATCCTCCTACAAGTCAAGGCTCCCATTTTCCTGCGATGCCTCTTCCTTTGAAGTTCAATTTTGGATTTGAGGAACCTCCAGAGAAGTCAGAGGAAGAAAAAGAATTGGACAAACTGTGGGCAGAGCTGGACTTTGCTCTCAGATCCAGCGAGATTGGTGTGGTGGATTCTAATACAGTTGAAAACGAACATGTCTTTCCTTCAAATCATGAGCAAGTGGAACTTTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTCAAATGTACATGTTGTTCATTTGTCAAATTGGAAATCAAAGATATTGTACCTTCTTTTGATACAAATCCATCTGGGAAGTCACAGAAGAGGGAATCTGGCTCATTTGAGCGTGTTAAATTTGATGATCTTCAACAGAATTTTGATTGTGACCCCCATGATGGATCTGATTCACAATCTCCTTTTGGACGCACAGTGTGGGATATCATTCCCGGTATAAGCGATAGCATGTACCCACATCAGCGTGAGGGCTTTGAATTTATTTGGAAAAATATAGCTGGAGGAATTTATCTTGATGAGTTGAGAGAAAGAAACAGCCTAAACATTGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGTTTTTCTTCAGACATACATGGAACTAAATCCGACATGCCGGCCTATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAAGGTTGGCATTCCCTTTCATAACCTGAATAAGCGGGATTTCACTCTCAAGGAGAATTTTTCAGCTCTCAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAAGCGTCGACAACATACGCCTTGTAAAGCTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAGAGACTTGCTGGAGTTCGAAAGAATTCTAAATATAAGAAGCGTGGACGCCCGAAAAACATCTCAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGACAGAACTTCTGAAAACTTACCGGAAAGTCCTGAATTGAGAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTTTACAGGGGCAACATACTACGAGAGAAGCTTCCAGGGTTGAGGAAATCTATAGTTATATTACGGCCAGCAGAGCTGCAGAAGAGTTATCTTGAGAGCATAGTTGGGAAGAATTCTTTTGAAGTGGAATATGCTGAGTCCTTGATCTCTGTACACCCTTCTCTGAAACTGAAATGTGATAAAGAAAATTTTGATGTTGATAAGGAAAAGTTAGAGAGGGTTAGAATGAATCCTGAACTAGGAGTGAAAATACAGCTTCTCCTGGAAATTATACGTCTGAGTGACGCTTTGAATGAAAAAGTATTGGTTTTCAGCCAATACATTGAACCATTGTCCTTTATAGAAGAGCATCTTAAGTTTCATTTTAATTGGAATGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGTGATATAAAGAAGCGACAAGCATTAATAAATACCTTTAACGATTCAACAAGTGAAGTTAGGGTATTGCTTGCATCAACAAGGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTGCTTGATGTTGTATGGAATCCCTCAGTGGAAAGGCAAGCTATATGCCGTGCATACAGACTTGGGCAGAAAAAAGTTGTTTATGTCTATCACCTTATTACCTCTGGGACTAGGGAAGAGGACAAATACAGTCGACAAATGAAAAAAGATCGGTTGTCTGAGTTAGTTTTCTCTCCTGAACAGAGCAGTAATCAAGTAAAAGTATCATCCACAGATCTGGATGACAGAATTTTGGAAGCAGTACTTCAGCATGAAAAGCTGAAAAATATATTCCAAAAGATAGCATACCAATCAAAGGAGTCCAGCATGAATGGGAATTTTGGCTAA 3549 40.49 MVDYSLPVSKRTRLRRAMAGKEHLEQRKKRRKKIRADSASDNVRGQVSSGGCDGGRRVNSSENCSVNRKIEVGKVGLSVDSGEESVEEIDAVTFGREGGDSVTFVGSESSGLKNVKGFSAKGIEKGNVDLIDLEDDVILIDEEGFDSVNSNCSISKSASAAAKVGDFVCLDLDNEDGSSGLISSGKGKGALEISPNKSIGESNCLNSNGCESGGCSYSTEPTCCSDDAVDESAESEASSSEEEYDDSSDGTYELEESDESRSESSGSENGKNNRSYCAEAGSRRERRKRVKIIEGGLKRRKAYGLDILVDHDEDGHNSNHGNGNVKVGEQVNCVARRTRSRYVLGVKKINTDLGTVSQPLCVDEEGSDFHDEKELDSLSRHDSRDSCDSDGDSDSTTDDEIYKPRVWSSSSKKRTEFNNQSDDDILSKKEDDDINKVESFHVGSKLWDSKSLPETNKRTQSEDCENFQKVHPKNCEDFQKVPPKNCHKFDNIFKTKGRALKSLDVFNILIDSIIADKELPSDELDPPTSQGSHFPAMPLPLKFNFGFEEPPEKSEEEKELDKLWAELDFALRSSEIGVVDSNTVENEHVFPSNHEQVELCLRGDHQLILDEQIGLKCTCCSFVKLEIKDIVPSFDTNPSGKSQKRESGSFERVKFDDLQQNFDCDPHDGSDSQSPFGRTVWDIIPGISDSMYPHQREGFEFIWKNIAGGIYLDELRERNSLNIGSGCIVSHAPGTGKTRLTIVFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWKVGIPFHNLNKRDFTLKENFSALKFLMQASPSGQSVDNIRLVKLFSWKKEKSILGVSYRLFERLAGVRKNSKYKKRGRPKNISRGKWDLLISSIDRTSENLPESPELREIRALINPFVHVYRGNILREKLPGLRKSIVILRPAELQKSYLESIVGKNSFEVEYAESLISVHPSLKLKCDKENFDVDKEKLERVRMNPELGVKIQLLLEIIRLSDALNEKVLVFSQYIEPLSFIEEHLKFHFNWNEGIELFHMDGKRDIKKRQALINTFNDSTSEVRVLLASTRACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEDKYSRQMKKDRLSELVFSPEQSSNQVKVSSTDLDDRILEAVLQHEKLKNIFQKIAYQSKESSMNGNFG 1182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70625678 70632595 - Tan0022453.1 Tan07g1908 759439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1908 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1150 IPR027417 -
Tan07g1908 1182 MobiDBLite consensus disorder prediction 226 282 - -
Tan07g1908 1182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 984 1148 IPR001650 -
Tan07g1908 1182 Pfam SNF2-related domain 694 777 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Tan07g1908 1182 Gene3D - 670 868 IPR038718 -
Tan07g1908 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 799 IPR027417 -
Tan07g1908 1182 Gene3D - 907 1180 IPR027417 -
Tan07g1908 1182 MobiDBLite consensus disorder prediction 41 60 - -
Tan07g1908 1182 MobiDBLite consensus disorder prediction 367 430 - -
Tan07g1908 1182 MobiDBLite consensus disorder prediction 227 253 - -
Tan07g1908 1182 SMART helicmild6 1007 1096 IPR001650 -
Tan07g1908 1182 MobiDBLite consensus disorder prediction 1 60 - -
Tan07g1908 1182 Pfam Helicase conserved C-terminal domain 978 1096 IPR001650 -
Tan07g1908 1182 CDD SF2_C_SNF 964 1107 IPR049730 -
Tan07g1908 1182 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 849 1174 IPR044567 GO:0080188(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1908 K10875 - - csv:105435045 1266.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1260 Tan-Chr5:13586572 Tan07g1908 Tan-Chr7:70625678 8.40E-56 dispersed
Tan07g1908 Tan-Chr7:70625678 Tan11g0339 Tan-Chr11:2659215 2.80E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40