Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1966 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACCTGATTTCAACCCTCATCACCAACATCACCCGCAGCAGCATCTTGACTCTCAATCTCGTCATGACGACGAATCTCATCAACCGTTGGAGTTCGTCTCTGCAGCCCCCGCCACCGATATGGTGGCGTCTCGCCGCCCGCGCGGTCGTCCCCCGGGTTCCAAAAACAAGCTGAAGCCCCCGGTTATCATAACCCGGGAGAGCGCCAATACCCTACGGGCTCATATTCTTGAGATTGGGAGTGGCTGCGACGTCTTCGATTGCATCGCCACCTACGCCCGCCGCCGCCAGCGGGGGATCTGCATCTTGAGCGGCAGCGGAATGGTAACGAATGTCAACTTGCGGCAACCGACAGCAGCCGGCGCAGTGTTAACCCTACAAGGGAGGTTTGAGATATTGTCGCTTACTGGATCTTTCCTGCCGCCGCCCGCTCCTCCTGGCGCCACCAGTTTGACCATATACTTGGCCGGTGGTCAAGGCCAAGTAGTCGGTGGCAACGTCATCGGAGAGTTGGTGGCGGCAGGACCAGTGACAGTCATCGCCGCATCGTTTACAAACGTAGCGTACGAGAGACTGCCACTAGAAGAACAAGACCAAGACCAAGACCAAGAACAAGAACAAGATCAACTTCCGATGCAGCCACCACCGACGTCGCAGCACGGCGGCGGTGGCGGGAGCAACAATAACTCATTTCCAGATCCATCTTCTGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTCTGA 813 55.1 MAGLDLGNRYIHQLQRPDFNPHHQHHPQQHLDSQSRHDDESHQPLEFVSAAPATDMVASRRPRGRPPGSKNKLKPPVIITRESANTLRAHILEIGSGCDVFDCIATYARRRQRGICILSGSGMVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVIGELVAAGPVTVIAASFTNVAYERLPLEEQDQDQDQEQEQDQLPMQPPPTSQHGGGGGSNNNSFPDPSSGLPFFNLPLNMQNQIQLPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71441659 71443075 + Tan0022383.1 Tan07g1966 759497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1966 270 Gene3D - 87 220 - -
Tan07g1966 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 262 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan07g1966 270 CDD DUF296 88 199 IPR005175 -
Tan07g1966 270 FunFam AT-hook motif nuclear-localized protein 87 214 - -
Tan07g1966 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 213 - -
Tan07g1966 270 MobiDBLite consensus disorder prediction 17 44 - -
Tan07g1966 270 MobiDBLite consensus disorder prediction 17 76 - -
Tan07g1966 270 MobiDBLite consensus disorder prediction 211 257 - -
Tan07g1966 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 200 IPR005175 -
Tan07g1966 270 MobiDBLite consensus disorder prediction 221 257 - -
Tan07g1966 270 ProSiteProfiles PPC domain profile profile. 84 220 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2148 Tan-Chr1:25087029 Tan07g1966 Tan-Chr7:71441659 7.40E-82 dispersed
Tan06g2213 Tan-Chr6:72524571 Tan07g1966 Tan-Chr7:71441659 2.90E-78 dispersed
Tan07g1966 Tan-Chr7:71441659 Tan08g0388 Tan-Chr8:3505718 3.80E-60 dispersed
Tan10g0419 Tan-Chr10:3375213 Tan07g1966 Tan-Chr7:71441659 2.90E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1966 - - - 0.0