Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1968 ATGGATTCACTTGACACTCCTCCTCCGCCGCTTTCAGCACCGTCCAACATGGCGGTCGGAGGACCGACGGCGTATTCGACGGCCATGTCCAACCCCAACAACAATGCCTCCTCCACGATTGGTCTAAATCCGGCTACAACTCAGATGATGCCGCCTTCTGCGCGATTTCCGTTTAACTCTATGATCGCCCCTGCATCCGTGCCTTTGGATTCTCTGAATGTTTCTCCGTACGACGGATCGCATTCCGGGAGTTTCAACGTTGATTCCGGGAAGAAGAAGAGAGGCCGGCCGCGGAAGTACGCGCCTGATGGTAACATTGCCTTGGGTTTGGCACCTACCACTGTTTCGTCTTCTGTTGGTCACGGGGATTTGAGCGGCACTCCTGATTCGGAGCAGCCGGCGAAGAAAGCGAGGGGAAGGCCACCTGGCTCGGGAAAGAAACAGATGAATGCACTTGGTTCAAGCGGCATTGGTTTTACTCCTCACGTTGTATTGGCGAAGCCTGGAGAGGACGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACCCTCACTAATGCTACCCTTCGACACTCGACGACATCTGGTGGTTCTGTGACATATGAGGGCCATTATGAGATAATCTCTCTCTCAGGCTCCTTTTTGCTATCGGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGTTGCTGGCTGGGTCAGACGGACAAGTTCTTGGTGGTGGAGTTTCAGGAATGCTATTGGCAGGTTCCCAAGTACAGGTGATTGTGGGAAGTTTTATCGATGATGATAAAAAATCCAACACAAGTATGCTGAATTCTGGATCTTCATCTGCTGCGCCATTTCAAATGATAAACTTTGGTGGTGGAACAGCAGCAGCAGCCAGTCCTCCATCGTTAGGGGCATCGAGCGGCGAGTCGTCTGCCGAAAATGGAGGAGGCAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAGTAATAGCAGCCAGCCGATCCACAATATGCAAATGTACCACCAATTATGGGCAGGCCAAACACAGCAGTGA 1089 50.87 MDSLDTPPPPLSAPSNMAVGGPTAYSTAMSNPNNNASSTIGLNPATTQMMPPSARFPFNSMIAPASVPLDSLNVSPYDGSHSGSFNVDSGKKKRGRPRKYAPDGNIALGLAPTTVSSSVGHGDLSGTPDSEQPAKKARGRPPGSGKKQMNALGSSGIGFTPHVVLAKPGEDVAAKILSFSQQGPRTVFILSANGTLTNATLRHSTTSGGSVTYEGHYEIISLSGSFLLSENNGTRSRTGGLSVLLAGSDGQVLGGGVSGMLLAGSQVQVIVGSFIDDDKKSNTSMLNSGSSSAAPFQMINFGGGTAAAASPPSLGASSGESSAENGGGSPLNNRHPGMFSNSSQPIHNMQMYHQLWAGQTQQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71451940 71456811 - Tan0019145.1 Tan07g1968 759499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1968 362 MobiDBLite consensus disorder prediction 110 125 - -
Tan07g1968 362 CDD DUF296 160 274 IPR005175 -
Tan07g1968 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
Tan07g1968 362 MobiDBLite consensus disorder prediction 311 344 - -
Tan07g1968 362 Gene3D - 161 288 - -
Tan07g1968 362 MobiDBLite consensus disorder prediction 81 151 - -
Tan07g1968 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 331 IPR039605 GO:0003680(InterPro)
Tan07g1968 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 275 IPR005175 -
Tan07g1968 362 MobiDBLite consensus disorder prediction 309 344 - -
Tan07g1968 362 MobiDBLite consensus disorder prediction 19 54 - -
Tan07g1968 362 MobiDBLite consensus disorder prediction 1 59 - -
Tan07g1968 362 ProSiteProfiles PPC domain profile profile. 153 296 IPR005175 -
Tan07g1968 362 SMART AT_hook_2 135 147 IPR017956 GO:0003677(InterPro)
Tan07g1968 362 SMART AT_hook_2 91 103 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2147 Tan-Chr1:25070130 Tan07g1968 Tan-Chr7:71451940 8.80E-81 dispersed
Tan07g1968 Tan-Chr7:71451940 Tan10g0352 Tan-Chr10:2874910 7.10E-46 dispersed
Tan07g1968 Tan-Chr7:71451940 Tan07g1762 Tan-Chr7:69191597 9.30E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1968 - - - 0.0