Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1978 ATGGAAATTATATACGTACGAAAATGTTATAACCTATTAGGTGGACATTTCCGAGTTAGACTCAACTGGCTAGCCTTTTCCAGTCCTGGTCCCGGCTACTTCCCCGATTTAATCGGCGATTTATTCTTACAGCTTCCGCTTTCCGTCTGTCTGTCTCTCTCCTCCACTCGCTTTCGTCCTACAATTTTTTTTTCTCTTTCTCTAAAACTAAAATTCAACCTAAATGCATTTCAAATAAATGTTAATCTCACTCGCAGCCCAAATTTTGTCTCGCTCCAATTCCCAATCCCACTTCATCTCTTCACCTTTCACCTCCGCCGCGAAGTTTCAAACCCGTACGGTAACTACCCAGTTCTCCGGCGGATCGGATTCAACTTCGAACACCGCTCAGTGTATGGAATGACGGACTACCGTTTACCGCCGACGATGAGTCTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTCATGAGCACCGATCTGAGTTCCTTCTGGGTTACCCCGCCGCAGCCGCAGCAACTTCTTCAGCCGCCGTATTCCTCTGTTTCCGCCGCTCCGGACCCCAGTAAAGCCGTCGGTCAATCTCCACCGCCGCCGTCCATGGCGGTTTTCAACCAGGAGACTCTGCAGCAGCGCCTTCAAGCCTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTACTCCGGCGCCACTGTCTTGGGCTGGGGTGACGGCTACTACAAAGGCGAAGAAGATAAAGGCAAAGAGAAGGCCAAATCGAGTACCTCAAAAGCGGAGCAAGAGCACCGTAAGAAGGTACTTCGCGAGCTCAACTCTCTCATTTCTGGCTCCCCTACCTCCGAAGACGACGCCGTCGACGAGGTCGTCACCGACACCGAGTGGTTCTTCTTGGTGTCGATGACTCAATCGTTTGTCTCCGGCGTCGGATTGCCGGGACAAGCGTTTTTCGACTCGAACCCTATTTGGGTTGCCGGCTCGGATCGGCTCGCGAACTCGTTCTGCGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACCATGGTTTGTATTCCGTCGGCGAATGGAGTCGTTGAATTGGGGTCGAGTGAGTTGATTTACCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGCTGAAACTTGGCCAATTAGCGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCAGTGAGCCATCAAACGCCATTGAAATTAAGGACCCTGTGACTGTGAGTAGTAATAATAACAACAATCCTGTTGCTTCTGCTCCAACTCCGAGCACCACAAGCAGCCAGCCGATTTCTAAAATTACAACACAGATTGAGAACCCCAAAACGAGCGTTGTAACTGAAACTCCAACCTCTGTTCTTCCTTCTCAAAAGAGCCACCGACAGTTGCAGCCGGTTCACACACAGAGCTTCTTCACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATATTAATAGCAGCTTGAAAGATGGGAATTCGCACTCTCTCAAGCCAGAATCCGGCGAGATTCTGAACTTTGGTGAGAGCAAGAGGAGTTCTTATCCCAACGCAGATAACTTGCCTTCGGGTAATTCCCAATTTGCAGGGGATGAGAATAAGAAGAAGAGATCCCCCACTTCACGTGGGAGCAACGAAGAGGGGATGCTTTCGTTTACTTCTGGTGTGATTCTTCCATCCTCTGGCGCTGTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCTGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTAGAGCCGGAGAAACGCCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCATGTTGAGGCTGAGAGGCAGAGGAGAGAAAAGCTAAATCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGCGATGCAATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACAGCAGAATCAGATAAGGAGGATCTGCAGAAGCAATTAGATTCAGTGAAGAAATTGATGTCTAGTAAAGATTCATGTATATCGAGCTCAAATCACCCCCCGCCAGATCAAGACATAAAAGCATCAAACATCCATGGAAACAATAGTGGTATTGAAACTGATATCGACGTGAAGATAATCAGTTGGGACGCAATGATCCGGATCCAATCGAGTAAGAAAAATCATCCTGCTGCACGGCTGATGGCAGCTTTGGAGGAACTGGACTTGGATATCAACCACGCGAGCATTTCAGTTGTCAATGATCTGATGATCCAACAAGCAACTGTCAAGATGAGTCGATTATACACTCAGGAGCAGCTAAGGATAGCTTTATCGTCGAAAATAGGCGCAACTCGGTAG 2466 48.58 MEIIYVRKCYNLLGGHFRVRLNWLAFSSPGPGYFPDLIGDLFLQLPLSVCLSLSSTRFRPTIFFSLSLKLKFNLNAFQINVNLTRSPNFVSLQFPIPLHLFTFHLRREVSNPYGNYPVLRRIGFNFEHRSVYGMTDYRLPPTMSLWADENASMMDAFMSTDLSSFWVTPPQPQQLLQPPYSSVSAAPDPSKAVGQSPPPPSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDYSGATVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLANSFCERARQGQVFGLQTMVCIPSANGVVELGSSELIYQSSDLMNKVRVLFNFNNLEAETWPISGVDQGENDPSSLWISEPSNAIEIKDPVTVSSNNNNNPVASAPTPSTTSSQPISKITTQIENPKTSVVTETPTSVLPSQKSHRQLQPVHTQSFFTRELNFSEFGYDNINSSLKDGNSHSLKPESGEILNFGESKRSSYPNADNLPSGNSQFAGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMSSKDSCISSSNHPPPDQDIKASNIHGNNSGIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRIALSSKIGATR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71506523 71509344 - Tan0021071.1 Tan07g1978 759509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1978 821 MobiDBLite consensus disorder prediction 605 645 - -
Tan07g1978 821 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 638 707 IPR036638 GO:0046983(InterPro)
Tan07g1978 821 Coils Coil 681 708 - -
Tan07g1978 821 SMART finulus 641 690 IPR011598 GO:0046983(InterPro)
Tan07g1978 821 PANTHER MYC 201 816 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Tan07g1978 821 MobiDBLite consensus disorder prediction 532 554 - -
Tan07g1978 821 Pfam Helix-loop-helix DNA-binding domain 639 685 IPR011598 GO:0046983(InterPro)
Tan07g1978 821 MobiDBLite consensus disorder prediction 253 272 - -
Tan07g1978 821 MobiDBLite consensus disorder prediction 532 573 - -
Tan07g1978 821 MobiDBLite consensus disorder prediction 713 734 - -
Tan07g1978 821 Pfam Plant bHLH transcription factor, ACT-like domain 744 802 IPR054502 -
Tan07g1978 821 MobiDBLite consensus disorder prediction 430 490 - -
Tan07g1978 821 FunFam Transcription factor bHLH13 628 702 - -
Tan07g1978 821 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 210 390 IPR025610 -
Tan07g1978 821 Gene3D - 634 714 IPR036638 GO:0046983(InterPro)
Tan07g1978 821 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 635 684 IPR011598 GO:0046983(InterPro)
Tan07g1978 821 MobiDBLite consensus disorder prediction 176 200 - -
Tan07g1978 821 CDD bHLH_AtAIB_like 632 707 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2295 Tan-Chr1:27579115 Tan07g1978 Tan-Chr7:71506523 3.00E-33 dispersed
Tan03g1733 Tan-Chr3:73247987 Tan07g1978 Tan-Chr7:71506523 1.60E-15 dispersed
Tan06g2039 Tan-Chr6:66160126 Tan07g1978 Tan-Chr7:71506523 4.20E-25 dispersed
Tan06g2040 Tan-Chr6:66160126 Tan07g1978 Tan-Chr7:71506523 3.30E-25 dispersed
Tan06g2259 Tan-Chr6:73484921 Tan07g1978 Tan-Chr7:71506523 2.60E-09 dispersed
Tan07g1978 Tan-Chr7:71506523 Tan10g0111 Tan-Chr10:1311704 4.50E-56 dispersed
Tan01g2188 Tan-Chr1:25750967 Tan07g1978 Tan-Chr7:71506523 2.90E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28009 PF14215 bHLH-MYC_N 1.10E-55 CL0161 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1978 K13422 - csv:101218165 1052.35