Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g1986 ATGGGGTCTTATGGCAGCCCTAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTATATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCTCTTGTCATTGCAATTATTGGAATTCTGGCAAGTGCTTTTCTTCTTATAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTCTAGGAATGGAGATCATGACCCGAATGAGGAATTTGAAGATAATCACAACCTAACACTTCATGAGCCATGGCATGTCGCCACAACTGGCTTGGATGAGGCACTGATCAAGTCCATTACGGTTTGCAAGTACAAAAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCAATGCATTGATACTTGGCTCAAATCACACTCCAATTGCCCATTGTGTCGTGCGATTATCGTCTCTGTCACTGCTTCTCCAGTTCAACTGCCTGCAAGCACTGCAAATCCCATAACTAGTGAGGCCACACCAGAGACTTCTCAGGCAAATGACCATGAGGCCGTGTCACAAGAATCTGGAAGAAGTTTCGGCAATGATGATATGAAGAACTCGGTTCGCGCTTTCAGTGACCTCGGAAATCTGGAGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCGTTATTGCGGATGTTCTGCGTCTAAATGAAGATGAGTTTGGAGCTATTGATGAACCTGGAAGTTCAGGTGATGTTGGATCATCCAAACATTCAATTGGTGAAGACAGCAAGTCAAGTCATAGGAAAAGAATCTTGCATTGCGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTCTCTCACAAGGCATGGAAGAGAACACAGAGGAATTGCCCCTGTCTGA 1077 42.99 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLISYYTIISKYCGNTNRLSRNGDHDPNEEFEDNHNLTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRAIIVSVTASPVQLPASTANPITSEATPETSQANDHEAVSQESGRSFGNDDMKNSVRAFSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCSQNHIVIADVLRLNEDEFGAIDEPGSSGDVGSSKHSIGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSLTRHGREHRGIAPV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71588916 71590966 + Tan0003254.1 Tan07g1986 759517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g1986 358 SUPERFAMILY RING/U-box 131 191 - -
Tan07g1986 358 MobiDBLite consensus disorder prediction 202 234 - -
Tan07g1986 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Tan07g1986 358 PANTHER RING-H2 FINGER PROTEIN ATL16 27 336 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Tan07g1986 358 SMART ring_2 143 184 IPR001841 -
Tan07g1986 358 MobiDBLite consensus disorder prediction 202 236 - -
Tan07g1986 358 CDD RING-H2_EL5-like 142 185 - -
Tan07g1986 358 Pfam Ring finger domain 142 185 IPR001841 -
Tan07g1986 358 FunFam RING-H2 finger protein ATL54 118 191 - -
Tan07g1986 358 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Tan07g1986 358 MobiDBLite consensus disorder prediction 297 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g1986 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2426 Tan-Chr2:92811132 Tan07g1986 Tan-Chr7:71588916 1.80E-39 dispersed
Tan03g1831 Tan-Chr3:73817359 Tan07g1986 Tan-Chr7:71588916 1.30E-35 dispersed
Tan05g1359 Tan-Chr5:18175885 Tan07g1986 Tan-Chr7:71588916 5.10E-21 dispersed
Tan06g2246 Tan-Chr6:73357535 Tan07g1986 Tan-Chr7:71588916 1.40E-60 dispersed
Tan06g2420 Tan-Chr6:76731096 Tan07g1986 Tan-Chr7:71588916 6.60E-29 dispersed
Tan07g1986 Tan-Chr7:71588916 Tan10g0692 Tan-Chr10:5696187 6.80E-25 dispersed
Tan07g1986 Tan-Chr7:71588916 Tan10g0469 Tan-Chr10:3847485 2.50E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68