Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan07g1999 | ATGAGGAACTATGGCTCAGTTTCATATGATGAAGAAGAAGAACATAGTATGAAGAAGAGGAAGAATGAAGAAGATGAAGAAGAAGAAGAAGAAGATGATGATAAGGATGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAACAGACAAATAAAGTTGCTTTTTATAAACTCTTTGGTTTTGCTGATTTTTATGACTATTTTCTCATGACTATTGGCTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGAAGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTTTATATCTCAGTGTAGCTATATTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGGGAGCGTCAAGCAGCAAAAATGAGAATGGCATATTTAAGATCAATGTTGAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTTATTGCTGCTATAACCAGTGATATTGTTGTTGTTCAAGATGCCATTTCTGAGAAAGTTGGGAACTTTTTGCACTATATAAGCCGGTTTATATCAGGATTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCCTTAATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTTAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCTGTGAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGGAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCCATGCATTGTGTCCTTTTCTTATCATGGGCTCTGCTAGTTTGGTTCACCAGCATTGTTGTTCACAAGAAAATTGCCAATGGTGGAGAGTCCTTCACCACAATGCTTAATGTTGTCATTGCTGGCCTGTCACTTGGGCAGGCCGCACCAGACATTTCTGCCTTTGTTCGAGCAAAGGCAGCAGCCTATCCTATTTTTCAGATGATAGAGAGAAGCACAGTAAGCAAAAGCAGCTCCAAAACAGGCCGGAAATTAAACAAGCTTGATGGTCATATACAATTCAAGGATGTTAATTTCAGCTACCCTTCTCGTTCGGATGTAGTTATATTTAACAAGTTATCTCTTGATATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGTTCAGGGAAGAGCACAGTCATATCTTTGATCGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTAGATGGTAACAACATCAAGGATCTGGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTGTTCGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTCGAGGACATTACGCGTGCAGCAAAACTTTCTGAGGCTTTATCGTTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAAAATCCATCAATCCTGTTGTTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAGAAGAGTGTTCAAGAGGCACTCGATCGTGTCATGGTTGGTCGAACAACCATAGTAGTGGCGCATCGCCTATCTACCATAAGGAATGCCGATGTCATTGCTGTCGTTCAAGAGGGTAAGATAGTCGAAACTGGAAGCCATGATGAGCTCATTTCAAAGCCAGACAGTGCCTATGCATCACTTGTCCAGTTCCAAGAAATGGCATCTCTGCAACGACATCCCTCAATCGGACAGTTGGGTCGACCACCGAGTATAAAGTACTCAAGAGAATTATCTCGCACTACAACAAGCTTTGGTGCAAGTTTTCGCTCTGAGAAAGAATCTCTTGGAAGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAGAAGACTTTACTCCATGGTCGGACCGGATTGGATGTATGGAGTTGTTGGCGTCATTGGAGCTTTCGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTATATGGACTGGGATACAACTCAACATGAGATCAAGAAAATCTCTTTACTTTTCTGTGGAGGTGCAGTTTTAACTGTATTTTTTCATGCAGTTGAACATCTCTGTTTTGGAGTTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAATGATGTTCCATGCTATTTTGAGAAATGAGATAGGATGGTTCGATGATATAAACAACACAAGTGCTATGCTTTCGTCACGTCTAGAGACCGATGCAACTTTGTTACGAACTATAGTTGTCGACCGCTCTACAATTCTTCTGCAGAATGTAGCTTTGGTTGTTGCATCGTTCATCATTGCTTTCATATTAAATTGGAGAATCACTCTAGTCGTCTTGGCCACCTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAATACACTTGCCGGTGAGGCAGTTGGTAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAAGTCCTTGATCTATATGCCAAGGAGCTCATTGAGCCCTCGAAACGTTCACTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAATTCTTCATCTTTTCATCTTATGGCCTGGCATTGTGGTATGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAAGCATTCATGGTTTTGATAGTAACTGCATTAGCAATGGGTGAGACTTTGGCTTTGGCCCCTGACCTTTTGAAAGGAAACCAGATGGTGGCATCAGTGTTCGAAGTGATGGATCGACAGACAGAGGTGTCGGGCGATGTTGGCGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCATTAGTTGGGCAAAGCGGTTCGGGTAAAAGCTCAGTTCTCGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAGGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATTGGCCTTGTCCAACAGGAACCGGCTCTTTTCGCCACGTCGATTTATGAGAACATTCTTTACGGGAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCAAAGCTTTCCAATGCACATAACTTCGTCAGTGCACTTCCTGAAGGCTACTCAACCAAAGTAGGCGAAAGAGGTATCCAACTTTCAGGTGGCCAACGACAAAGGATAGCGATAGCCAGAGCAGTCCTAAAGAACCCAGAAATACTACTACTCGACGAAGCCACGAGTGCACTCGATGTCGAATCGGAACGCGTGGTTCAGCAAGCCTTAGACAGGTTGATGAAGAACAGAACAACAGTGGTGGTTGCACATAGGCTTTCTACCATTAAAAACTGTGACCAAATCTCAGTGATCCAAGATGGAAAGATAATAGAACAAGGGACTCATTCAAGCCTTACTGAGAACAAGAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAACAGCAACAAATACAGTGA | 3822 | 42.41 | MRNYGSVSYDEEEEHSMKKRKNEEDEEEEEEDDDKDEKKKKKKKKKKQQTNKVAFYKLFGFADFYDYFLMTIGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKKIANGGESFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFQMIERSTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRSDVVIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSAYASLVQFQEMASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSARRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVFFHAVEHLCFGVMGERLTLRVREMMFHAILRNEIGWFDDINNTSAMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELIEPSKRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGRVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLSNAHNFVSALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKNCDQISVIQDGKIIEQGTHSSLTENKNGAYYKLINIQQQQQQIQ | 1273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 71669247 | 71678605 | - | Tan0000769.1 | Tan07g1999 | 759530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan07g1999 | 1273 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 698 | 1013 | - | - | |
| Tan07g1999 | 1273 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Tan07g1999 | 1273 | ProSitePatterns | ABC transporters family signature. | 533 | 547 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | ProSitePatterns | ABC transporters family signature. | 1167 | 1181 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Tan07g1999 | 1273 | Pfam | ABC transporter transmembrane region | 710 | 980 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Tan07g1999 | 1273 | Pfam | ABC transporter transmembrane region | 72 | 342 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Tan07g1999 | 1273 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1022 | 1266 | IPR027417 | - | |
| Tan07g1999 | 1273 | CDD | ABC_MTABC3_MDL1_MDL2 | 394 | 632 | - | - | |
| Tan07g1999 | 1273 | Gene3D | ABC transporter type 1, transmembrane domain | 10 | 107 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Tan07g1999 | 1273 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 386 | 632 | IPR027417 | - | |
| Tan07g1999 | 1273 | Pfam | ABC transporter | 413 | 561 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | SUPERFAMILY | ABC transporter transmembrane region | 58 | 364 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Tan07g1999 | 1273 | Pfam | ABC transporter | 1047 | 1195 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 394 | 630 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 70 | 367 | - | - | |
| Tan07g1999 | 1273 | Gene3D | - | 392 | 645 | IPR027417 | - | |
| Tan07g1999 | 1273 | Coils | Coil | 9 | 48 | - | - | |
| Tan07g1999 | 1273 | CDD | ABC_MTABC3_MDL1_MDL2 | 1028 | 1263 | - | - | |
| Tan07g1999 | 1273 | FunFam | ABC transporter B family member 1 | 384 | 633 | - | - | |
| Tan07g1999 | 1273 | SUPERFAMILY | ABC transporter transmembrane region | 687 | 1009 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Tan07g1999 | 1273 | Gene3D | ABC transporter type 1, transmembrane domain | 119 | 869 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Tan07g1999 | 1273 | PANTHER | ABC TRANSPORTER B FAMILY | 15 | 655 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Tan07g1999 | 1273 | Gene3D | ABC transporter type 1, transmembrane domain | 942 | 1271 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Tan07g1999 | 1273 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1028 | 1264 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | SMART | AAA_5 | 1055 | 1227 | IPR003593 | GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | SMART | AAA_5 | 421 | 607 | IPR003593 | GO:0016887(InterPro) | |
| Tan07g1999 | 1273 | FunFam | ABC transporter B family member 19 | 1018 | 1267 | - | - | |
| Tan07g1999 | 1273 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 72 | 359 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Tan07g1999 | 1273 | Gene3D | - | 1018 | 1267 | IPR027417 | - | |
| Tan07g1999 | 1273 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 709 | 995 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan07g1999 | Tan-Chr7:71669247 | Tan11g0522 | Tan-Chr11:4464064 | 0.00E+00 | dispersed | |
| Tan09g1763 | Tan-Chr9:69149726 | Tan07g1999 | Tan-Chr7:71669247 | 3.40E-32 | dispersed | |
| Tan07g1999 | Tan-Chr7:71669247 | Tan07g2000 | Tan-Chr7:71669247 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan07g1999 | K05658 | - | csv:101219304 | 2241.08 |