Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2001 ATGAGAAAGGCCGGAAGAGGAGGCCGGCAGGATGATCAGAATCGAACCAAAGAGGTTTGGGTCGCTAAACACGCGAATCAAACACAGAATCACTCTTCTATCTCCGATTCTCAACGCTCGGACCTCGGAAATCGTCCCTCTACCAGTCGTAATTCCAACTACGAGCATCGGAATCACCGCCGCTCCCGTCACCAATCGGTCGAGCAATCGGAGGTTAGTGCTTTGGCCGATGGAATAGAATCTTTTACTTGCGATGAAAAACCTGTGGAATTTAAGGAAAGATGCAGAGATGTTGTAAATTCGAACAGTGAGATTAAAGACGAGATAGCTGGAAATTCTTGCTCTACTGAGGCTAGGGATGATGTTTACAGTAGGTTAGAGATGCTGCAGCGCAGTTCCGAGGAGCCGGAGTTGTCGGAGGAGCAGCTTAGGATTAATGATCAGTTACAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAACAAAGAGGGCAGCGCCGTTTCCAGATTTCCATACATATTGAGAGTCCCGGTGAAATTGCTGTTACTGCAAAGCTTAATTCGTCTAGTGCTCTTGAGATGAAAAGTACTAGTTCTGATGAATTCTCTTGTACTTTCAAAGTCAAGTATCTTAACCCCATTGTTTTGACCTGTTTATTACCTAAATCATATCCTAGTCACCTACCTCCATATTATACAATCTCCATTCAGTGGTTGGACTCTGTCAGAATTTCCAGTCTTTTGTCCGTGTTGGATGCTATGTGGACTGAACAAGTGGGGCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCTTCTCTGGCTTATCTTGAGCTAGATAAAGAGATAACGCTCGGTCCTTATGACAAGGGATATTCAGGAGATACACGTGCAGTTTCAGGAAGTGTTTCTCCAGAAGTTGATGTTCCTGCAATAATAAATTATGACAATCAGAGGCGTGATGAGGACTTCTGCATGAACTTGCAGGAATGCTGCATCTGTTTAAGTCAATATGCAGGTGCAAAGTTTGTAAGATTGCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAGACGTACTCAAACATGCATGTCAAGGAAGGCACAGTAAGCAAACTCAAATGTCCAGATGCCAAATGTGACGTTATGGTTCCTCCCGGTCTTTTGAAGCAATTGCTTGGTGGTGAAGAGTTTGAAAGATGGGAATCCATGATGCTCACAAAAACACTGGAATCGATGTCAGATGTGGTTTATTGCCCAAGGTGTGAAATCCCCTGCCTAGAGGACGTAGATCACGATGCTCAATGTTCAAAGTGTTACTTTAGTTTTTGTACACTTTGTTGCGAGAGACACCATGTTGGAATTGAGTGTATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAATTCATCTCAGTTAAGTGGGGATCAAAGACGAAAGGAACGTGAGATGATAAATGAGCTTATCAGTGTCAAGGAAATACTTCGGGATGCCAAGCAATGCCCATCTTGTAAAATGGCAATATCGCGGACCGAAGGTTGCAATAAGATGGTTTGCAATAATTGCGGACAGTATTTCTGTTACCGGTGTAGCAAGGCAATTGAAGGATATGATCATTTCAGGGAGGGCGCATGTGAATTGTTCCCGCAAGAAGCCATTCAACAGTGGGAAGAGCGCATGAATATACGGCAGGTGATGGGCCAGATTCAAGCAGAACTTTTTCCTGAACATGGTCATCCATGTCCTAATTGTGGTCAACTTAATGCCAAGGTTGGGAATAACAATCACGTACGTTGCTGGGCATGTCAAACCCACTACTGCTATTTATGCAGAAAAGTTGTGAAGCGCAGCTCCCAGCACTATGGACCCAAGGGATGCAAACAACACACAGTCGGTTGA 1941 43.89 MRKAGRGGRQDDQNRTKEVWVAKHANQTQNHSSISDSQRSDLGNRPSTSRNSNYEHRNHRRSRHQSVEQSEVSALADGIESFTCDEKPVEFKERCRDVVNSNSEIKDEIAGNSCSTEARDDVYSRLEMLQRSSEEPELSEEQLRINDQLQEDELLALESIYGENVYILDEQRGQRRFQISIHIESPGEIAVTAKLNSSSALEMKSTSSDEFSCTFKVKYLNPIVLTCLLPKSYPSHLPPYYTISIQWLDSVRISSLLSVLDAMWTEQVGQEVVYQWVEWLQMSSLAYLELDKEITLGPYDKGYSGDTRAVSGSVSPEVDVPAIINYDNQRRDEDFCMNLQECCICLSQYAGAKFVRLPCKHYFCWKCMETYSNMHVKEGTVSKLKCPDAKCDVMVPPGLLKQLLGGEEFERWESMMLTKTLESMSDVVYCPRCEIPCLEDVDHDAQCSKCYFSFCTLCCERHHVGIECMTPEMKLRLLEERQNSSQLSGDQRRKEREMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIEGYDHFREGACELFPQEAIQQWEERMNIRQVMGQIQAELFPEHGHPCPNCGQLNAKVGNNNHVRCWACQTHYCYLCRKVVKRSSQHYGPKGCKQHTVG 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71694042 71698912 + Tan0008867.1 Tan07g2001 759532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2001 646 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Tan07g2001 646 Pfam IBR domain, a half RING-finger domain 410 468 IPR002867 GO:0008270(InterPro)
Tan07g2001 646 Pfam Ring finger domain 340 377 IPR001841 -
Tan07g2001 646 MobiDBLite consensus disorder prediction 1 19 - -
Tan07g2001 646 FunFam RBR-type E3 ubiquitin transferase 483 589 - -
Tan07g2001 646 SUPERFAMILY RING/U-box 501 554 - -
Tan07g2001 646 MobiDBLite consensus disorder prediction 1 74 - -
Tan07g2001 646 CDD BRcat_RBR_RNF14 421 472 - -
Tan07g2001 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 424 IPR013083 -
Tan07g2001 646 SMART RWD2001b 152 287 IPR006575 GO:0005515(InterPro)
Tan07g2001 646 Pfam RWD domain 148 281 IPR006575 GO:0005515(InterPro)
Tan07g2001 646 ProSiteProfiles TRIAD supradomain profile. 338 565 IPR044066 -
Tan07g2001 646 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 141 557 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Tan07g2001 646 SUPERFAMILY RING/U-box 410 472 - -
Tan07g2001 646 ProSiteProfiles Zinc finger RING-type profile. 342 390 IPR001841 -
Tan07g2001 646 FunFam RBR-type E3 ubiquitin transferase 337 421 - -
Tan07g2001 646 SUPERFAMILY RING/U-box 588 642 - -
Tan07g2001 646 SMART ibrneu5 497 559 IPR002867 GO:0008270(InterPro)
Tan07g2001 646 SMART ibrneu5 410 468 IPR002867 GO:0008270(InterPro)
Tan07g2001 646 Gene3D Ubiquitin Conjugating Enzyme 139 290 IPR016135 -
Tan07g2001 646 SMART ring_2 515 598 IPR001841 -
Tan07g2001 646 SMART ring_2 342 389 IPR001841 -
Tan07g2001 646 ProSiteProfiles RWD domain profile. 152 287 IPR006575 GO:0005515(InterPro)
Tan07g2001 646 SUPERFAMILY RING/U-box 339 423 - -
Tan07g2001 646 MobiDBLite consensus disorder prediction 20 51 - -
Tan07g2001 646 Pfam IBR domain 512 546 - -
Tan07g2001 646 SUPERFAMILY UBC-like 146 281 IPR016135 -
Tan07g2001 646 CDD RING-HC_ITT1-like 339 395 - -
Tan07g2001 646 Gene3D - 485 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2001 K11971 - - csv:101211646 1138.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30