Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2007 ATGGAGTTATTTCCTGCACAGCCAGATTTGTCACTACAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAAGAACAACCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTAGAGTCCTCTAAAACCACTCCCAAACATCACCCTAATCATCATTTTGATCTCTCACTTTCTAATTTCACTCAAATTAACCATCACCAATACTCCAATATTCCTCCTCCTCTTCTTCCTCATCCTCCTCCTCATCATCATCTTCATCATCATCACCATCATCCCGCTTTCAACGGCGGTGGCGCTCACCTTTTCGAAACCCTACACAAAAACCACCACCGACCCGCGATTTTCCACCACAATCCGCCGTCATTAGAACCACCGCCTCCGACACCGATCACGTTCCCGGGCCAGAACAATAATGTTCAAGACTTGGGATTTCTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAGCTAACCCCGCCGGCAGCGGCAGCGGCGGCGCCGTTACTGCTCCCTCCGCCGCCGGCCATGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCTACACCGAAGTCAGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTGGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAACCATGGGAAGGCAAAATGAGCATTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGACAAAGATTATCATGCCCTGTGGAGCAATTCTTCAAGAGAAGCTTGGTTACATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCCCTCGAGAATGATATGGATCCAAAGAGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATCTTTGTGGAAGCACAAATCCTCAAAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1173 45.78 MELFPAQPDLSLQISPPNTNKPSSTWRRTTSQEEVDLGFWNNLNLESSKTTPKHHPNHHFDLSLSNFTQINHHQYSNIPPPLLPHPPPHHHLHHHHHHPAFNGGGAHLFETLHKNHHRPAIFHHNPPSLEPPPPTPITFPGQNNNVQDLGFLRPIRGIPVYHQTANPAGSGSGGAVTAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPTMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKSSNNERLSEISSSTDLCGSTNPQKPNLEFTLGRPV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 71775286 71780018 + Tan0012196.1 Tan07g2007 759538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2007 390 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 389 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Tan07g2007 390 MobiDBLite consensus disorder prediction 11 30 - -
Tan07g2007 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677(InterPro)
Tan07g2007 390 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Tan07g2007 390 Gene3D - 205 262 - -
Tan07g2007 390 FunFam Myb family transcription factor 204 262 - -
Tan07g2007 390 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Tan07g2007 390 MobiDBLite consensus disorder prediction 1 30 - -
Tan07g2007 390 MobiDBLite consensus disorder prediction 335 390 - -
Tan07g2007 390 MobiDBLite consensus disorder prediction 359 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4854 Tan-Chr1:114254903 Tan07g2007 Tan-Chr7:71775286 9.50E-30 dispersed
Tan02g1912 Tan-Chr2:87549699 Tan07g2007 Tan-Chr7:71775286 6.90E-31 dispersed
Tan04g2177 Tan-Chr4:77985316 Tan07g2007 Tan-Chr7:71775286 7.90E-41 dispersed
Tan04g2178 Tan-Chr4:77985316 Tan07g2007 Tan-Chr7:71775286 7.30E-41 dispersed
Tan05g2161 Tan-Chr5:72395274 Tan07g2007 Tan-Chr7:71775286 2.30E-30 dispersed
Tan05g2162 Tan-Chr5:72395274 Tan07g2007 Tan-Chr7:71775286 1.40E-30 dispersed
Tan07g2007 Tan-Chr7:71775286 Tan07g2179 Tan-Chr7:73328062 7.00E-15 dispersed
Tan11g1417 Tan-Chr11:12746496 Tan07g2007 Tan-Chr7:71775286 6.80E-30 transposed
Tan01g2221 Tan-Chr1:26405776 Tan07g2007 Tan-Chr7:71775286 1.00E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28017 None None None None Tan TF