Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan07g2078 | ATGGCGAAAACCGGCGTGTTTGATTCTAATCCTACAGTCATGGGGAAGGCCACGGAGTTGAAGAGGGAGTTACAGAGGCTCATCGTCGCTATAATTGATGATGATAATTACTCCACCGACACTATCGATCATGCTAAAGAGATTCTTTGTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAGTTCCGTTGTCCGCTTTCTAGAGAACTCATGAGAGATCCTGTTGTTGTTTCTACTGGCGAGACATACGACAGACCCTTCATTCACAAATGGTTAAAATCAGGAAACCGAACGTGCCCCAGAACTCAGCAAGTTCTTTCACACACAAACCTTACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGCACAAGTCGGGGAATTGAGTTGCAAGACCGTGTCCATTATCTTGATGACGATGTAATAACGGAAGCTGATAGAGACCGTTTTCTTACGTTAATAGAGAAAATGTCTACGACAATATCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGGATGCCCTCATTTCGAGCACTTTTTGGCGAGTCCCTTGATGCTATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAATGTAGTATTCACGCGGATCTGCAAGAAGATGTGATCACGACCCTCTTGAATCTGTCAATCCATGACAACAATAAGAAACTTGTTGCTGAAACTCCCAAGGTAGTTCCTCTTCTAATGGAAGCGTTGAGATCGGGAACTATGGAAACAAGGAGCAATGCAGCTGCAGCTCTTTTCACTTTGTCAGCTCTCGACTCAAACAAAGCACTCATTGGGAAAGCTGGTGCCTTGAAACCACTTATCGACCTTTTAGATGAGGGCCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATAATTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGATTCTGAAAAAGATAATGAACCAAATGCACGTTGACGAGTTGTTGGCTATTCTTGCAATGCTTTCGAACCATCCAAAAGCTATTGAGGAAATAGGAGAACTTGGAGCTGTTCCTTTCTTGCTCAGAATTATCAGGGAAAGTGCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACTATCTCTGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTCGAGAGACTGAACAGGGCAGTTAATATGACCCATACTGCATAA | 1371 | 43.69 | MAKTGVFDSNPTVMGKATELKRELQRLIVAIIDDDNYSTDTIDHAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLKSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVHYLDDDVITEADRDRFLTLIEKMSTTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQCSIHADLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVILKKIMNQMHVDELLAILAMLSNHPKAIEEIGELGAVPFLLRIIRESACSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 72266705 | 72270597 | + | Tan0018720.1 | Tan07g2078 | 759609 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan07g2078 | 456 | PANTHER | U BOX DOMAIN-CONTAINING | 40 | 447 | - | - | |
Tan07g2078 | 456 | Gene3D | - | 219 | 351 | IPR011989 | - | |
Tan07g2078 | 456 | FunFam | RING-type E3 ubiquitin transferase | 71 | 145 | - | - | |
Tan07g2078 | 456 | SUPERFAMILY | ARM repeat | 178 | 446 | IPR016024 | - | |
Tan07g2078 | 456 | CDD | RING-Ubox_PUB | 73 | 125 | IPR045210 | - | |
Tan07g2078 | 456 | Gene3D | - | 352 | 454 | IPR011989 | - | |
Tan07g2078 | 456 | FunFam | RING-type E3 ubiquitin transferase | 156 | 452 | - | - | |
Tan07g2078 | 456 | Pfam | Armadillo/beta-catenin-like repeat | 286 | 323 | IPR000225 | GO:0005515(InterPro) | |
Tan07g2078 | 456 | SUPERFAMILY | RING/U-box | 72 | 148 | - | - | |
Tan07g2078 | 456 | SMART | Ubox_2 | 75 | 138 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan07g2078 | 456 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 145 | IPR013083 | - | |
Tan07g2078 | 456 | SMART | arm_5 | 364 | 405 | IPR000225 | GO:0005515(InterPro) | |
Tan07g2078 | 456 | SMART | arm_5 | 242 | 283 | IPR000225 | GO:0005515(InterPro) | |
Tan07g2078 | 456 | SMART | arm_5 | 284 | 324 | IPR000225 | GO:0005515(InterPro) | |
Tan07g2078 | 456 | ProSiteProfiles | U-box domain profile. | 71 | 145 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan07g2078 | 456 | Pfam | U-box domain | 73 | 142 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan07g2078 | Tan-Chr7:72266705 | Tan08g1060 | Tan-Chr8:19016235 | 1.80E-91 | dispersed | |
Tan07g2078 | Tan-Chr7:72266705 | Tan05g0377 | Tan-Chr5:2751092 | 4.70E-39 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan07g2078 | K27971 | - | csv:101215688 | 795.423 |