Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2078 ATGGCGAAAACCGGCGTGTTTGATTCTAATCCTACAGTCATGGGGAAGGCCACGGAGTTGAAGAGGGAGTTACAGAGGCTCATCGTCGCTATAATTGATGATGATAATTACTCCACCGACACTATCGATCATGCTAAAGAGATTCTTTGTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAGTTCCGTTGTCCGCTTTCTAGAGAACTCATGAGAGATCCTGTTGTTGTTTCTACTGGCGAGACATACGACAGACCCTTCATTCACAAATGGTTAAAATCAGGAAACCGAACGTGCCCCAGAACTCAGCAAGTTCTTTCACACACAAACCTTACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGCACAAGTCGGGGAATTGAGTTGCAAGACCGTGTCCATTATCTTGATGACGATGTAATAACGGAAGCTGATAGAGACCGTTTTCTTACGTTAATAGAGAAAATGTCTACGACAATATCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGGATGCCCTCATTTCGAGCACTTTTTGGCGAGTCCCTTGATGCTATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAATGTAGTATTCACGCGGATCTGCAAGAAGATGTGATCACGACCCTCTTGAATCTGTCAATCCATGACAACAATAAGAAACTTGTTGCTGAAACTCCCAAGGTAGTTCCTCTTCTAATGGAAGCGTTGAGATCGGGAACTATGGAAACAAGGAGCAATGCAGCTGCAGCTCTTTTCACTTTGTCAGCTCTCGACTCAAACAAAGCACTCATTGGGAAAGCTGGTGCCTTGAAACCACTTATCGACCTTTTAGATGAGGGCCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATAATTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGATTCTGAAAAAGATAATGAACCAAATGCACGTTGACGAGTTGTTGGCTATTCTTGCAATGCTTTCGAACCATCCAAAAGCTATTGAGGAAATAGGAGAACTTGGAGCTGTTCCTTTCTTGCTCAGAATTATCAGGGAAAGTGCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACTATCTCTGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTCGAGAGACTGAACAGGGCAGTTAATATGACCCATACTGCATAA 1371 43.69 MAKTGVFDSNPTVMGKATELKRELQRLIVAIIDDDNYSTDTIDHAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLKSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVHYLDDDVITEADRDRFLTLIEKMSTTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQCSIHADLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVILKKIMNQMHVDELLAILAMLSNHPKAIEEIGELGAVPFLLRIIRESACSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA 456
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 72266705 72270597 + Tan0018720.1 Tan07g2078 759609
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2078 456 PANTHER U BOX DOMAIN-CONTAINING 40 447 - -
Tan07g2078 456 Gene3D - 219 351 IPR011989 -
Tan07g2078 456 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Tan07g2078 456 SUPERFAMILY ARM repeat 178 446 IPR016024 -
Tan07g2078 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
Tan07g2078 456 Gene3D - 352 454 IPR011989 -
Tan07g2078 456 FunFam RING-type E3 ubiquitin transferase 156 452 - -
Tan07g2078 456 Pfam Armadillo/beta-catenin-like repeat 286 323 IPR000225 GO:0005515(InterPro)
Tan07g2078 456 SUPERFAMILY RING/U-box 72 148 - -
Tan07g2078 456 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g2078 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Tan07g2078 456 SMART arm_5 364 405 IPR000225 GO:0005515(InterPro)
Tan07g2078 456 SMART arm_5 242 283 IPR000225 GO:0005515(InterPro)
Tan07g2078 456 SMART arm_5 284 324 IPR000225 GO:0005515(InterPro)
Tan07g2078 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g2078 456 Pfam U-box domain 73 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g2078 Tan-Chr7:72266705 Tan08g1060 Tan-Chr8:19016235 1.80E-91 dispersed
Tan07g2078 Tan-Chr7:72266705 Tan05g0377 Tan-Chr5:2751092 4.70E-39 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2078 K27971 - csv:101215688 795.423