Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan07g2079 | ATGGGGCCAGGCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGAAACCACTATTTTCAGAAGGGTCGAATTGGAGCCGCCATTGAAGCCTATACCGAGGCGATTACGCTATGCCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAATTCTGTCAAGGCACATTATATGTTAGGACTAGCATTAATACAAAATAAAGTAGATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCATCCACTGAACGTTCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATATTTTCTCGACCAGTCTGAACTAGAAGGGTTTGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTCAAAAAGTTGCAGAGGCGGATGCACCATCAGAGGTGCCTGATTATCTTTGTTGTAAAATCACACTTGATATTCTTCGTGATCCGGTTATTACACCGAGCGGGGTTACATATGAGAGAGCAGTGATTCTCGACCACTTTCGAAAGGTGGGTAACTTCGATCCCATAACACGGGAGCTTCTCAACGAGTCACAGCTAGTACCGAACTTAGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATAGATGGGCTTATAATACAGATTAA | 846 | 44.33 | MGPGVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSNSVKAHYMLGLALIQNKVDPEGIKHLEKALDLGRGANPKSYIVEEIWQELAKAKYRQWEKASTERSWELQSLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRSVFQKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLNESQLVPNLAIKEAVQAFLDKHRWAYNTD | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 72274347 | 72281923 | - | Tan0014879.1 | Tan07g2079 | 759610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan07g2079 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan07g2079 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan07g2079 | 281 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
Tan07g2079 | 281 | Pfam | TPR repeat | 21 | 55 | - | - | |
Tan07g2079 | 281 | Gene3D | Tetratricopeptide repeat domain | 8 | 144 | IPR011990 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
Tan07g2079 | 281 | SUPERFAMILY | TPR-like | 12 | 136 | IPR011990 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | SUPERFAMILY | RING/U-box | 199 | 278 | - | - | |
Tan07g2079 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan07g2079 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Tan07g2079 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 8 | 279 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan07g2079 | Tan-Chr7:72274347 | Tan08g1621 | Tan-Chr8:65799506 | 1.10E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan07g2079 | K09561 | - | csv:101215457 | 534.258 |