Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2079 ATGGGGCCAGGCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGAAACCACTATTTTCAGAAGGGTCGAATTGGAGCCGCCATTGAAGCCTATACCGAGGCGATTACGCTATGCCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAATTCTGTCAAGGCACATTATATGTTAGGACTAGCATTAATACAAAATAAAGTAGATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCATCCACTGAACGTTCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATATTTTCTCGACCAGTCTGAACTAGAAGGGTTTGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTCAAAAAGTTGCAGAGGCGGATGCACCATCAGAGGTGCCTGATTATCTTTGTTGTAAAATCACACTTGATATTCTTCGTGATCCGGTTATTACACCGAGCGGGGTTACATATGAGAGAGCAGTGATTCTCGACCACTTTCGAAAGGTGGGTAACTTCGATCCCATAACACGGGAGCTTCTCAACGAGTCACAGCTAGTACCGAACTTAGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATAGATGGGCTTATAATACAGATTAA 846 44.33 MGPGVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSNSVKAHYMLGLALIQNKVDPEGIKHLEKALDLGRGANPKSYIVEEIWQELAKAKYRQWEKASTERSWELQSLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRSVFQKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLNESQLVPNLAIKEAVQAFLDKHRWAYNTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 72274347 72281923 - Tan0014879.1 Tan07g2079 759610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2079 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g2079 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g2079 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Tan07g2079 281 Pfam TPR repeat 21 55 - -
Tan07g2079 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Tan07g2079 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Tan07g2079 281 SUPERFAMILY TPR-like 12 136 IPR011990 GO:0005515(InterPro)
Tan07g2079 281 SUPERFAMILY RING/U-box 199 278 - -
Tan07g2079 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Tan07g2079 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Tan07g2079 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Tan07g2079 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan07g2079 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Tan07g2079 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2079 K09561 - - csv:101215457 534.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g2079 Tan-Chr7:72274347 Tan08g1621 Tan-Chr8:65799506 1.10E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003324 3 4 1 6 2 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 45