Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2128 ATGGCGGTTTCTCTTAGACTACAGCTTTCCGCCGCTTCTTCGTTGCTCATTCTTCTTCTCAACATCCTCTTCGTTCATTTTAGTTTTGCTGGAGATGAGAGATTTCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATGTTAAGAATGAACATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAACAGCACAGAGAGAAGGAATTTGGGGTTCTTCTCTTGCGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAACTTCGCCGCAAGCACCTGGCAGATTGCGGCATCGGATTCGGTCGCAACGCTGTCGGTGGCCGTGATGGGCGATACTACGTCGTTTCAGATCCCGGCGACGACGACCCTGTCAATCCCAGACCAGGAACCCTCCGCCACGCCGTGATTCAAGACAGGCCATTGTGGATCGTGTTCAAAAGAGACATGGTCATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATCGATGCCCGTGGAGCTAATGTCCACATTGCCTATGGCGCCTGCATTACAATCCAATTTGTAACCAATGTCATTATTCATGGCTTGCACATTCATGACTGCAAGCCAACGGGGAACGCCATGGTTCGAAGCTCCCCTAGTCATTATGGATGGAGGACAATGGCGGATGGTGATGGGATTTCCATTTTTGGGTCGAGTCATATTTGGATCGACCATAATTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCAACTGCCATTACCATTTCTAACAACTACTTCACCCATCACAATGAGGTGATGCTTTTGGGACATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTGACCATAGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCGAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATTGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAACGGTGTATGGAAGCACTGGAACTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCCTCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTAGTGGGCTCCATTACTTCATCTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1305 47.43 MAVSLRLQLSAASSLLILLLNILFVHFSFAGDERFQSFNSSSMADRYVKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSSAGALSCRRGYRC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 72582443 72587291 + Tan0011508.1 Tan07g2128 759659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2128 434 SUPERFAMILY Pectin lyase-like 63 429 IPR011050 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Tan07g2128 434 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Tan07g2128 434 PANTHER PECTATE LYASE 18-RELATED 24 431 IPR045032 GO:0030570(InterPro)
Tan07g2128 434 SMART amb_all 160 357 IPR002022 -
Tan07g2128 434 FunFam Pectate lyase 85 427 - -
Tan07g2128 434 Gene3D - 85 427 IPR012334 -
Tan07g2128 434 Pfam Pectate lyase 180 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3352 Tan-Chr5:85315597 Tan07g2128 Tan-Chr7:72582443 5.10E-79 dispersed
Tan07g1259 Tan-Chr7:56526653 Tan07g2128 Tan-Chr7:72582443 8.60E-131 dispersed
Tan07g1262 Tan-Chr7:56607071 Tan07g2128 Tan-Chr7:72582443 2.70E-132 dispersed
Tan07g2128 Tan-Chr7:72582443 Tan10g0580 Tan-Chr10:4745473 6.40E-195 dispersed
Tan11g0685 Tan-Chr11:5943029 Tan07g2128 Tan-Chr7:72582443 1.30E-168 transposed
Tan10g0579 Tan-Chr10:4745473 Tan07g2128 Tan-Chr7:72582443 1.90E-202 wgd
Tan06g2325 Tan-Chr6:74602422 Tan07g2128 Tan-Chr7:72582443 6.00E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2128 K01728 - csv:101207204 824.313