Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2188 ATGAAGAGTGATATTAAGATAAAAAGGGGGAGAAGAGCTGGAAAAGGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAAGAGGTGGTGATGAGATGGTTGCTGCATCAGAATCGCATTCGGGGTTGGAGAATTCAGCAAGTGAACACTCTTCACGGATTGGTGAGATTGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCTTCACTTCGTGAGAGTGGTTGTTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTCTTTGAAGGAATAGACATCACTGCAGTAACTAGTAAAATAATGATCTCCATTGCCAGAAGAGGAGACCGTCCAAGGAGACGATCGCAAAATTTTACTACCCCGCCGATGTCTATGCATGCTGTCAGTTTACTCATGGAAGCCATCTTTCTCAAAGCAAAATCACTGCAAGGCCTTGGGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCGGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTGACAAAGGCCGTCGAGCTGCTACCAGAACTATGGAAACTAGGTGATTCTTCTCAAGAAGCGATCCTTTCATATCGGCGGGCACTCCTTCATCAGTGGAACCTTGATGCAGGAACCATTGCTCGAATTCAGAAAGAGTTCGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCAAATCTCCGCTCCCAAATGGACAGCTCATTTGTACCAAAAAACAACATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGAATGGGATCCTTCAATCTTGGATCACCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGCTTTGGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGAAAAGATAGGTACCGTGCTCTGGCTCTTTGTTACTATGGAGCAGGCGAAGACTTGTCTGCTTTGAATCTTTTGAGGAAATTGTTGGGTAGTCACGAGGATCCTAAATCTCTTCCCGCTTTATTAATGGCATCGAAGATTTGTGGAGAGCACTGTGATCTTGCTGAAGAAGGAACAAGTTATGCTTGTAGAGCTCTTCAAAACTTGGATGCTGGATGCGATCAATTGGAAGGTGCTGCCAACTGTTTATTGGGTGTCTCACTGTCTGTATCTTCTAAATCAGCCATTGCAGATTCCGAGCGGTCCACCAGACAGTCTGAGGCGATAGAGGCCCTGGAAGCTGCCCGGAAGATGACTAGAATGACCGACCCTAACGTTCTCTATCATTTGAGTCTTGAATACGCCAATGAGAGGAAGTTGGAATCAGCACTTCATTATGCGAAAGAGTGTCTCAAACTGGAAGGTGGATCTAATGTTAGAACTTGGTTACTGCTGGCTAGGATTCTCTCTGCCCAAAAACGATTTACGGATGGCGAAACTATTGTAAACGCAGCTCTGGAGCAGACTGGGAAATGGGATCAAGGTGAATTGCTTCGAACGAAAGCAAAGCTTCTGATTGCACAGGATGATTTGAAAGGTGCTATTGGGACTTATACTCACCTTCTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTATATAAGAGCAGCAGAAATTATGTTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATATAAGGCTCTCACAGTGGCACGATGCTGAGGCCTGTCTTTCAAAATCGAAGGCCATCCGCTCTCATTCAGCTTCTAGATGTCACATAACAGGTATGCTTTATGAAGCAAAATGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGACTGCTCTAGACATCGATCCCGTTCATGTCCCGAGCTTGGTTTCGTCTGCCGTGGTTATTAGACATCTCGGCCACCGATCGCATCCCGTTATTCGCAGCTTTTTGATGGAAGCGTTACGGCTTGACCAGACGAACCACGCTGCGTGGTACAATCTCGGGCTATTCTACAAATCTGAAGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGTTTTGAGGCTGCTACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2205 43.54 MKSDIKIKRGRRAGKGENIRKIMKCLCSGEKRGGDEMVAASESHSGLENSASEHSSRIGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTSKIMISIARRGDRPRRRSQNFTTPPMSMHAVSLLMEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLGDSSQEAILSYRRALLHQWNLDAGTIARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIEWDPSILDHLSFALTISGDTRALAGQIEELPPGILHRKDRYRALALCYYGAGEDLSALNLLRKLLGSHEDPKSLPALLMASKICGEHCDLAEEGTSYACRALQNLDAGCDQLEGAANCLLGVSLSVSSKSAIADSERSTRQSEAIEALEAARKMTRMTDPNVLYHLSLEYANERKLESALHYAKECLKLEGGSNVRTWLLLARILSAQKRFTDGETIVNAALEQTGKWDQGELLRTKAKLLIAQDDLKGAIGTYTHLLAVFQVQSKSFGLGDKKLYKSSRNYVRSLQLEVWHDLALVYIRLSQWHDAEACLSKSKAIRSHSASRCHITGMLYEAKCLYKEALKAFMTALDIDPVHVPSLVSSAVVIRHLGHRSHPVIRSFLMEALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 73379230 73383810 - Tan0011005.1 Tan07g2188 759719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2188 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Tan07g2188 734 MobiDBLite consensus disorder prediction 37 58 - -
Tan07g2188 734 SUPERFAMILY TPR-like 441 560 IPR011990 GO:0005515(InterPro)
Tan07g2188 734 PANTHER PROTEIN NPG1 13 734 IPR043376 -
Tan07g2188 734 Gene3D Tetratricopeptide repeat domain 152 568 IPR011990 GO:0005515(InterPro)
Tan07g2188 734 Gene3D Tetratricopeptide repeat domain 573 728 IPR011990 GO:0005515(InterPro)
Tan07g2188 734 SUPERFAMILY TPR-like 532 706 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4174 Tan-Chr1:106531331 Tan07g2188 Tan-Chr7:73379230 8.40E-168 dispersed
Tan01g4175 Tan-Chr1:106531331 Tan07g2188 Tan-Chr7:73379230 8.40E-168 dispersed
Tan07g2188 Tan-Chr7:73379230 Tan10g0658 Tan-Chr10:5311663 2.30E-245 dispersed
Tan07g2188 Tan-Chr7:73379230 Tan07g2189 Tan-Chr7:73379230 0.00E+00 tandem
Tan10g0657 Tan-Chr10:5311663 Tan07g2188 Tan-Chr7:73379230 2.20E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2188 K21843 - csv:101223229 1266.14