Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan07g2230 ATGGCAGCTTCTTCTGTTGGCTCCCCATCCCCTTGTGGAGCATGCAAGTTTCTGCGTCGAAAGTGTGTGCCTGATTGTATTTTTGCTCCTTACTTTTCCTCTGAACAAGGACCTGCAAGATTTGCCGCCATTCATAAGGTTTTTGGAGCTAGTAATGTCTCTAAGCTTCTCCTCCATGTCCCTGTTCCTCATCGCTCTGAAGCTGTTGTCACTATTTCCTATCAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAACAGGTGGCATACTTGCAAACACAGTTGATGCAAGCAAAGGCTCAACTTGCACAAACCTTGATGGATTCAGGAGGAAACATGGAGATTCAATGGACAGGCAACTTCAATCTCCCCAATGGAATCCAAAATTTTCGAAATGATCAAACTCAAATGATGAACCCTGCTGCTGTTAATTCCCCTCAGAGCTCTCTGGAATCAGCTGCCAACAACGACGAAGCATTATTATTCATGAACTTTCAAGACAGCCAAAGCAGATCCCCAGAAGCACCTCAATTCCCTAGAAGAAGACCAGCTTCTTCTTCTTGTCATGCTGATGTTGGGGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 648 45.22 MAASSVGSPSPCGACKFLRRKCVPDCIFAPYFSSEQGPARFAAIHKVFGASNVSKLLLHVPVPHRSEAVVTISYQAQARIRDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNLPNGIQNFRNDQTQMMNPAAVNSPQSSLESAANNDEALLFMNFQDSQSRSPEAPQFPRRRPASSSCHADVGELQALALRMMRN 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 73746238 73747444 - Tan0008300.1 Tan07g2230 759761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan07g2230 215 MobiDBLite consensus disorder prediction 178 199 - -
Tan07g2230 215 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Tan07g2230 215 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Tan07g2230 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 176 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2154 Tan-Chr6:71327896 Tan07g2230 Tan-Chr7:73746238 2.40E-42 dispersed
Tan07g2230 Tan-Chr7:73746238 Tan10g1658 Tan-Chr10:34729835 2.90E-39 dispersed
Tan07g2229 Tan-Chr7:73735870 Tan07g2230 Tan-Chr7:73746238 3.10E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28048 PF03195 LOB 2.30E-37 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan07g2230 K13944 - csv:101214521 299.671