Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0003 ATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATTTGCATGCTCCATAATGTCACATTACATGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTAGCCTCAAGCAAAGCAGGCAGCCTGCTGAATTCTTCTGCAAAACTTTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAACGGCACCTTCTGACCACTGGCTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGCGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTGCGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCTATATGGGAAGTTGAGCCCGTTGTCACTCCCTTCTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACTAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCGTGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTCTGCCGTCCATGGTTGCTCCAAGTGCTCTGCATGGAACTCTTACTAATGATGACCCGTCTAAACTATTGAGTTTTCAAGCACCGGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAATTCAACAGAACCAAGTTGGCCAATTGCCAGGAACTACGTGGTCTCAACAGCAGCAGCTGGAGCAATTATTACAAGTTCCTGGAAGCCAACAGTTACAGCAACAGCAGCTGCCACCCCAGCAAGAACTACAGCAGCAGCAACTCCAGTCACAACGACAACAGCAGACCTCCCAATCTGCTCTTCTGAACAATGGTGTAGCTGCTGCTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTATACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATCAACAGTCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTTTATCGCAAGAAACACAGTTTCAGCCACCAATAGAGCAGCAACCTAGCCTTCTTCCGAGACACCAGCAGCAGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTTTGTGTCAAAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCATCAGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAACAGCAGCAGCAACAACCGTTGCTCTCCCCAGCTAGCAGCCCACTATTACCACCTCAGCTGATACAGCAGCAGCATATCCATCTGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCCGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATGACCCAATCCCATAACCAATTTAAACCAACCACGGCAATTAGGGCATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTGTCAAACCTGCTCAATAAAAACCAACAAGGAGCAGCCACGCTGGGGGGGGATTCGGTAGTTGAGCCAGCAACTAACCTGGCTCAGGAACTACAAAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAGGGATCGGACCAACTAAAATATAAAGGCACGGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTCCGGATGCTGGGACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACGAAACAACATCCCTTTCAGTAATAGCATTGATGGATTGGCACCAGATACTTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGAGGGGTTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAATTTGCCTTTCAAGCCTGGCTGCTCAAGTGATGTCAACGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCAAATCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGCATCGATGTCACTCGTTACAAAGGATATGACGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCAGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAAGCTCCCAATCAAGCTTGCAGCGGGACGGATAGTGGAAATGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCATCATTCAATCGATGA 3105 44.9 MNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDISLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQLGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKAIQQNQVGQLPGTTWSQQQQLEQLLQVPGSQQLQQQQLPPQQELQQQQLQSQRQQQTSQSALLNNGVAAANHLPNQSLQQPLVYSQLQQQQLLAGNQQSHQTSQPSNKNSFQTTSLSQETQFQPPIEQQPSLLPRHQQQTQFQQAPLQLLQQSLCQRAQQQPQVQQFSQPIPSEQQLQLQLLQKLQQQQQQPLLSPASSPLLPPQLIQQQHIHLQNQQLPPLPLSNQPQFNTSGGSFQTEKLNSNGFSSLGLMQSQQVPMTQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRIKHEFPNSKGSDQLKYKGTVPDQLEASSSGTSYCPDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGVVPRDIETELSTAAISSQSFGVPNLPFKPGCSSDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 204155 249233 + Tan0021731.1 Tan08g0003 759895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0003 1034 Pfam AUX/IAA family 904 994 IPR033389 -
Tan08g0003 1034 FunFam Auxin response factor 233 305 - -
Tan08g0003 1034 FunFam Auxin response factor 68 172 - -
Tan08g0003 1034 Pfam B3 DNA binding domain 70 171 IPR003340 GO:0003677(InterPro)
Tan08g0003 1034 CDD B3_DNA 69 170 IPR003340 GO:0003677(InterPro)
Tan08g0003 1034 Gene3D - 233 304 - -
Tan08g0003 1034 SMART B3_2 70 172 IPR003340 GO:0003677(InterPro)
Tan08g0003 1034 ProSiteProfiles PB1 domain profile. 907 1000 IPR053793 -
Tan08g0003 1034 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 559 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan08g0003 1034 MobiDBLite consensus disorder prediction 512 541 - -
Tan08g0003 1034 Pfam Auxin response factor 196 278 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan08g0003 1034 ProSiteProfiles B3 DNA-binding domain profile. 70 172 IPR003340 GO:0003677(InterPro)
Tan08g0003 1034 Gene3D - 68 171 IPR015300 -
Tan08g0003 1034 FunFam Auxin response factor 902 996 - -
Tan08g0003 1034 Gene3D - 902 996 - -
Tan08g0003 1034 SUPERFAMILY DNA-binding pseudobarrel domain 59 199 IPR015300 -
Tan08g0003 1034 SUPERFAMILY CAD & PB1 domains 920 985 - -
Tan08g0003 1034 MobiDBLite consensus disorder prediction 1015 1034 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2736 Tan-Chr3:80297074 Tan08g0003 Tan-Chr8:204155 1.10E-148 dispersed
Tan08g0003 Tan-Chr8:204155 Tan08g0912 Tan-Chr8:12853855 1.10E-227 dispersed
Tan08g0003 Tan-Chr8:204155 Tan08g0004 Tan-Chr8:206929 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28062 PF02309 AUX_IAA 2.20E-09 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0003 K14486 - csv:101210917 1608.19