Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0004 ATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAACGGCACCTTCTGACCACTGGCTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGCGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTGCGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCTATATGGGAAGTTGAGCCCGTTGTCACTCCCTTCTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACTAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCGTGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTCTGCCGTCCATGGTTGCTCCAAGTGCTCTGCATGGAACTCTTACTAATGATGACCCGTCTAAACTATTGAGTTTTCAAGCACCGGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAATTCAACAGAACCAAGTTGGCCAATTGCCAGGAACTACGTGGTCTCAACAGCAGCAGCTGGAGCAATTATTACAAGTTCCTGGAAGCCAACAGTTACAGCAACAGCAGCTGCCACCCCAGCAAGAACTACAGCAGCAGCAACTCCAGTCACAACGACAACAGCAGACCTCCCAATCTGCTCTTCTGAACAATGGTGTAGCTGCTGCTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTATACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATCAACAGTCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTTTATCGCAAGAAACACAGTTTCAGCCACCAATAGAGCAGCAACCTAGCCTTCTTCCGAGACACCAGCAGCAGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTTTGTGTCAAAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCATCAGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAACAGCAGCAGCAACAACCGTTGCTCTCCCCAGCTAGCAGCCCACTATTACCACCTCAGCTGATACAGCAGCAGCATATCCATCTGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCCGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATGACCCAATCCCATAACCAATTTAAACCAACCACGGCAATTAGGGCATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTGTCAAACCTGCTCAATAAAAACCAACAAGGAGCAGCCACGCTGGGGGGGGATTCGGTAGTTGAGCCAGCAACTAACCTGGCTCAGGAACTACAAAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAGGGATCGGACCAACTAAAATATAAAGGCACGGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTCCGGATGCTGGGACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACGAAACAACATCCCTTTCAGTAATAGCATTGATGGATTGGCACCAGATACTTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGAGGGGTTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAATTTGCCTTTCAAGCCTGGCTGCTCAAGTGATGTCAACGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCAAATCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGCATCGATGTCACTCGTTACAAAGGATATGACGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCAGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAAGCTCCCAATCAAGCTTGCAGCGGGACGGATAGTGGAAATGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCATCATTCAATCGATGA 2799 45.23 MQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQLGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKAIQQNQVGQLPGTTWSQQQQLEQLLQVPGSQQLQQQQLPPQQELQQQQLQSQRQQQTSQSALLNNGVAAANHLPNQSLQQPLVYSQLQQQQLLAGNQQSHQTSQPSNKNSFQTTSLSQETQFQPPIEQQPSLLPRHQQQTQFQQAPLQLLQQSLCQRAQQQPQVQQFSQPIPSEQQLQLQLLQKLQQQQQQPLLSPASSPLLPPQLIQQQHIHLQNQQLPPLPLSNQPQFNTSGGSFQTEKLNSNGFSSLGLMQSQQVPMTQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRIKHEFPNSKGSDQLKYKGTVPDQLEASSSGTSYCPDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGVVPRDIETELSTAAISSQSFGVPNLPFKPGCSSDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 206929 249233 + Tan0021731.2 Tan08g0004 759896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0004 932 Gene3D - 1 69 IPR015300 -
Tan08g0004 932 Gene3D - 131 202 - -
Tan08g0004 932 Gene3D - 800 894 - -
Tan08g0004 932 MobiDBLite consensus disorder prediction 410 439 - -
Tan08g0004 932 Pfam B3 DNA binding domain 6 69 IPR003340 GO:0003677(InterPro)
Tan08g0004 932 SUPERFAMILY CAD & PB1 domains 818 883 - -
Tan08g0004 932 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 455 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan08g0004 932 MobiDBLite consensus disorder prediction 913 932 - -
Tan08g0004 932 Pfam Auxin response factor 94 176 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan08g0004 932 Pfam AUX/IAA family 802 892 IPR033389 -
Tan08g0004 932 ProSiteProfiles PB1 domain profile. 805 898 IPR053793 -
Tan08g0004 932 FunFam Auxin response factor 131 203 - -
Tan08g0004 932 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
Tan08g0004 932 FunFam Auxin response factor 800 894 - -
Tan08g0004 932 CDD B3_DNA 6 68 IPR003340 GO:0003677(InterPro)
Tan08g0004 932 ProSiteProfiles B3 DNA-binding domain profile. 1 70 IPR003340 GO:0003677(InterPro)
Tan08g0004 932 SMART B3_2 1 70 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0004 Tan-Chr8:206929 Tan08g0912 Tan-Chr8:12853855 8.10E-179 dispersed
Tan08g0003 Tan-Chr8:204155 Tan08g0004 Tan-Chr8:206929 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28063 PF02309 AUX_IAA 1.90E-09 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0004 K14486 - mtr:11445778 1118.99