Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0006 ATGTCAACACAACTCCGTATCGCTCCTATTTTTAGAATGTTGCCAACAATGACACAACTTGGTTCATTCCGAATTACAACGAAGCGGAAAAAAAGCATTGCCCAACACACACAGAGACAACCACGCAATTCTTCGAACAGCGGCTGGTTTGTATCCGGAGCCTATTCCATTTTCCGTTCCGGCTCTGCAATGGCCGCTGTTCGAATTGTGTTCCTGTTCCTTCTTGGTGGTCTACCTCTCTCCTGTTCCGTGTCGGAGAACGAGGCACTCCTGAAGCTGAAGCAATCCTTCATCCATTCCGAAACCCTCAATTCCTGGAACCCGGACTCCGTCCCCTGCTCCGCTCGATGGACTGGAATAATCTGTAACAGGGGCGTCATCACCGGCCTCCATCTCACAGGCCTTCGACTCTCTGGCAAGATCGACGTCGAAGCTCTCCTCCAGCTTCGCTCCCTTCGAACCGTCAGCCTAATCAACAACAGCTTCTCCGGGCCCATTCCCGAGTTCAACAAAATCGGCGTTCTCAAGTCCCTCCTTCTCTCTGGGAACGACTTCTCTGGGGATATCCCTAACGATTTCTTTTCGTCCCTTACCTCCCTCAAAAAGGTCTGGCTCTCCTTCAACAAGTTCTCCGGTAACATTCCACACTCTCTATCACAACTCTCTCATCTGATCGAACTCCACCTGGAAGGCAACCAATTCTCCGGGCAAATCCCCCACCTGAAACAGGCCTCCATAACCTCCCTCGATTTATCCAACAACAAACTAGAGGGAGAAATTCCGGAGAGCCTATCCAAATTCGAAGCCAAGGCTTTTTCCGGAAACGAAGGCCTGTGCGGGAAACCACTCCCCAAATCCTGCGACAACAACAATAATGCGCGAATTTCGGAAGAAAAGGCCACTCCTCCTCCTCCTGGGGAGTCCCAAGGAAACGTCTCCAAATTAGTAATGGCGTCGTTGATAGCGGTGGCTGTATTTCTGATGGTGTTCATATTTTTGAGCGCGTCAAAGCGCAGAGAGGATGAGTTCAGCGTGCTGGGGAGGGAGCATATGGAGGAGGTGGTGGAAGTGCACGTGCCGAGTTCGGGGCACAGGGAGCAGTCGAGCAGAAAAGGTGGGGACTCCAAGAGAGGGTCGCAACAGGGGAAGGGGGTGATGAGTGATCTTGTGGTAGTGAATGAAGAGAAGGGTACGTTTGGGTTGGCAGATTTGATGAAGGCCGCGGCTGAGGTGCTGGGGAATGGTGGGTTAGGATCAGCGTATAAGGCGGTCATGGCCAACGGGCTGTCGGTGGTGGTCAAGAGAATGAGAGAAATGAACAAACTAGGGAAGGATGGGTTCGATGCAGAGATGAGGCGCCTCGGAAAGCTGCGCCATCACAACATACTCACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAGCTGCTGGTGTCCGAGTACATTCCAAAGGGCAGCCTCTTGTATGTGTTGCATGGTGATCGTGGAGCCTGCCATGCCGAGCTTAACTGGGGCACCCGGTTAAGAATTGTGCAGGGGATCGCCAAGGGTATGGGGTTCCTCCATACCGAATTCGCAACCTACGATCTACCGCATGGGAATCTCAAATCCAGCAACGTTCTTTTAAGCGACAACTACGAGCCACTTCTCAGCGACTATGCCTTTCAGCCCCTAATCAATCCCAGCAATGCCCCGCAGGCAATGTTTGCGTACAGATCCCCAGAGTACACCCAAAGCCAGGAAGTTTCTCCCAAGTCTGATGTTTATTGCCTTGGAATTATCATTCTCGAAATTCTTACCAGCAAATTTCCTTCTCAATATCTTACCAATGGCAAGGGTGGCACCGATGTCGTGCAGTGGGTTTCCTCCGCAGTTTCCGAGAAGAGGGAGGCTGAACTCATCGACCCTGAGATTGCAAACGACGCCAATGCACTCCATCGCATGGTCGACCTCCTCAGAATTGGCGCCGATTGCACCCAAACCAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGATGAAATATGA 2040 51.62 MSTQLRIAPIFRMLPTMTQLGSFRITTKRKKSIAQHTQRQPRNSSNSGWFVSGAYSIFRSGSAMAAVRIVFLFLLGGLPLSCSVSENEALLKLKQSFIHSETLNSWNPDSVPCSARWTGIICNRGVITGLHLTGLRLSGKIDVEALLQLRSLRTVSLINNSFSGPIPEFNKIGVLKSLLLSGNDFSGDIPNDFFSSLTSLKKVWLSFNKFSGNIPHSLSQLSHLIELHLEGNQFSGQIPHLKQASITSLDLSNNKLEGEIPESLSKFEAKAFSGNEGLCGKPLPKSCDNNNNARISEEKATPPPPGESQGNVSKLVMASLIAVAVFLMVFIFLSASKRREDEFSVLGREHMEEVVEVHVPSSGHREQSSRKGGDSKRGSQQGKGVMSDLVVVNEEKGTFGLADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRMREMNKLGKDGFDAEMRRLGKLRHHNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHAELNWGTRLRIVQGIAKGMGFLHTEFATYDLPHGNLKSSNVLLSDNYEPLLSDYAFQPLINPSNAPQAMFAYRSPEYTQSQEVSPKSDVYCLGIIILEILTSKFPSQYLTNGKGGTDVVQWVSSAVSEKREAELIDPEIANDANALHRMVDLLRIGADCTQTNPQQRPEMREAIRRIDEI 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 298990 301649 + Tan0009739.1 Tan08g0006 759898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0006 679 MobiDBLite consensus disorder prediction 289 310 - -
Tan08g0006 679 SUPERFAMILY Protein kinase-like (PK-like) 410 674 IPR011009 -
Tan08g0006 679 MobiDBLite consensus disorder prediction 356 377 - -
Tan08g0006 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 85 679 IPR046959 -
Tan08g0006 679 Gene3D Transferase(Phosphotransferase) domain 1 482 679 - -
Tan08g0006 679 MobiDBLite consensus disorder prediction 356 385 - -
Tan08g0006 679 ProSiteProfiles Protein kinase domain profile. 406 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0006 679 Gene3D Ribonuclease Inhibitor 244 291 IPR032675 -
Tan08g0006 679 FunFam Pollen receptor-like kinase 1 482 679 - -
Tan08g0006 679 Gene3D Phosphorylase Kinase; domain 1 374 481 - -
Tan08g0006 679 Pfam Leucine Rich Repeat 199 221 IPR001611 GO:0005515(InterPro)
Tan08g0006 679 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Tan08g0006 679 Pfam Leucine Rich Repeat 175 194 IPR001611 GO:0005515(InterPro)
Tan08g0006 679 Pfam Leucine rich repeat N-terminal domain 86 123 IPR013210 -
Tan08g0006 679 Pfam Protein kinase domain 410 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0006 679 Gene3D Ribonuclease Inhibitor 194 243 IPR032675 -
Tan08g0006 679 Gene3D Ribonuclease Inhibitor 85 193 IPR032675 -
Tan08g0006 679 FunFam Nuclear pore complex protein NUP107 83 240 - -
Tan08g0006 679 SUPERFAMILY L domain-like 81 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0006 Tan-Chr8:298990 Tan09g1789 Tan-Chr9:69389262 3.90E-106 dispersed
Tan08g0006 Tan-Chr8:298990 Tan02g2602 Tan-Chr2:94651665 1.40E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67901 PF00069 Pkinase 8.90E-27 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0006 K28077 - csv:101215919 1047.34