Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0018 ATGAGCGGAGGAAGAAACAGATTCCCATTTACTGCTGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTATATGGTCTCCGGCATCCCTGTTCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCCCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGCAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTATTGTGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAACCAACAACAACAATAAGTAATGCTCTAAACTCTAATCCATCCACCCCAGCCATCTCCTCCATCACCCAGAACTCTACTCTCTCCTCTTCTTCTCATTCCCTTGCTTCCCTCAGCACCTCATTACCCTCTGAAACTCATACCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCCCACCCTTTTCTCTACCAACATGCCTCTTCTTCTAGGCCCCCTGGTTCTGCTCATTTGCAGCAAAACTCCAACACCTCTTCCTTGCTTCTTGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGGTATGTTTATGGGGTGAAGGAAGATGTTGATGAGCATCCCTTTCTGTCGGAAGAACACTCTGGGAACATGAGAGGCTTCTCTGCTTCATCTATGGAAGATTCCTGGCAGCTGACTCCTCTGACAATGAGTTGCTCTTCCGCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCCTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGAGCATTACTACGCGCTAGGAAAATATAACGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGCCATCCAATACTGGCTCAGTCTCTGCAACTCGGCTTTCAATAAGTTAA 1104 46.83 MSGGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKPTTTISNALNSNPSTPAISSITQNSTLSSSSHSLASLSTSLPSETHTQHLHHSCFNTHPPHPFLYQHASSSRPPGSAHLQQNSNTSSLLLDPGSYSHNNPDYRYVYGVKEDVDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSASSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEHYYALGKYNEMQSKMEREEPQKTMHHFFDEWSPKDRESWLDLDDKPSNTGSVSATRLSIS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 438945 441656 + Tan0000233.1 Tan08g0018 759910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0018 367 MobiDBLite consensus disorder prediction 125 147 - -
Tan08g0018 367 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 186 216 - -
Tan08g0018 367 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 351 367 - -
Tan08g0018 367 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Tan08g0018 367 PANTHER GROWTH-REGULATING FACTOR 5 5 366 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Tan08g0018 367 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 192 216 - -
Tan08g0018 367 MobiDBLite consensus disorder prediction 346 367 - -
Tan08g0018 367 Pfam WRC 78 120 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2799 Tan-Chr4:87531207 Tan08g0018 Tan-Chr8:438945 7.60E-66 dispersed
Tan04g2800 Tan-Chr4:87531207 Tan08g0018 Tan-Chr8:438945 1.00E-65 dispersed
Tan05g1523 Tan-Chr5:31030836 Tan08g0018 Tan-Chr8:438945 1.80E-51 dispersed
Tan08g0018 Tan-Chr8:438945 Tan10g0326 Tan-Chr10:2720228 4.50E-24 dispersed
Tan08g1759 Tan-Chr8:69483338 Tan08g0018 Tan-Chr8:438945 2.00E-28 transposed
Tan08g0018 Tan-Chr8:438945 Tan09g1089 Tan-Chr9:63239220 1.30E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28064 PF08879 WRC 7.70E-21 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0018 - - - 0.0