Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0018 ATGAGCGGAGGAAGAAACAGATTCCCATTTACTGCTGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTATATGGTCTCCGGCATCCCTGTTCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCCCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGCAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTATTGTGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAACCAACAACAACAATAAGTAATGCTCTAAACTCTAATCCATCCACCCCAGCCATCTCCTCCATCACCCAGAACTCTACTCTCTCCTCTTCTTCTCATTCCCTTGCTTCCCTCAGCACCTCATTACCCTCTGAAACTCATACCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCCCACCCTTTTCTCTACCAACATGCCTCTTCTTCTAGGCCCCCTGGTTCTGCTCATTTGCAGCAAAACTCCAACACCTCTTCCTTGCTTCTTGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGGTATGTTTATGGGGTGAAGGAAGATGTTGATGAGCATCCCTTTCTGTCGGAAGAACACTCTGGGAACATGAGAGGCTTCTCTGCTTCATCTATGGAAGATTCCTGGCAGCTGACTCCTCTGACAATGAGTTGCTCTTCCGCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCCTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGAGCATTACTACGCGCTAGGAAAATATAACGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGCCATCCAATACTGGCTCAGTCTCTGCAACTCGGCTTTCAATAAGTTAA 1104 46.83 MSGGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKPTTTISNALNSNPSTPAISSITQNSTLSSSSHSLASLSTSLPSETHTQHLHHSCFNTHPPHPFLYQHASSSRPPGSAHLQQNSNTSSLLLDPGSYSHNNPDYRYVYGVKEDVDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSASSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEHYYALGKYNEMQSKMEREEPQKTMHHFFDEWSPKDRESWLDLDDKPSNTGSVSATRLSIS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 438945 441656 + Tan0000233.1 Tan08g0018 759910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0018 367 MobiDBLite consensus disorder prediction 125 147 - -
Tan08g0018 367 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 186 216 - -
Tan08g0018 367 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 351 367 - -
Tan08g0018 367 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Tan08g0018 367 PANTHER GROWTH-REGULATING FACTOR 5 5 366 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Tan08g0018 367 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan08g0018 367 MobiDBLite consensus disorder prediction 192 216 - -
Tan08g0018 367 MobiDBLite consensus disorder prediction 346 367 - -
Tan08g0018 367 Pfam WRC 78 120 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2799 Tan-Chr4:87531207 Tan08g0018 Tan-Chr8:438945 7.60E-66 dispersed
Tan04g2800 Tan-Chr4:87531207 Tan08g0018 Tan-Chr8:438945 1.00E-65 dispersed
Tan05g1523 Tan-Chr5:31030836 Tan08g0018 Tan-Chr8:438945 1.80E-51 dispersed
Tan08g0018 Tan-Chr8:438945 Tan10g0326 Tan-Chr10:2720228 4.50E-24 dispersed
Tan08g1759 Tan-Chr8:69483338 Tan08g0018 Tan-Chr8:438945 2.00E-28 transposed
Tan08g0018 Tan-Chr8:438945 Tan09g1089 Tan-Chr9:63239220 1.30E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1759 . 46 414 GRF Transcription Factor Family AT2G36400 53.7 2.3e-69 260.4
Tan04g2799 . 11 110 GRF Transcription Factor Family AT3G13960 81.0 6.8e-50 195.7
Tan08g0018 . 2 111 GRF Transcription Factor Family AT3G13960 72.3 3.6e-43 173.3
Tan09g1089 . 8 110 GRF Transcription Factor Family AT3G13960 74.8 6.2e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28064 PF08879 WRC 7.70E-21 No_clan Tan TF