Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0026 ATGCCGGTGCATCTCACGCCAAATGCAATCTCTGCAATTGTCGCTGGTGATGTTAATTCCAAGCCCTTGGTTCAGGTCCTTGATATTAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCCGTTTCTGCTGAGCAAGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATTGATTATGTTTGCAGTCCCATCAAGAGCCGCAAGATTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGTTTTTTGCACAGAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCTTCTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGCGATCTCCGTCGCTATAATAATGCTAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTAACCTGCTTCAATGCTGTTGTTGATCGCTTCTATGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGAAGCCTAAAACCTGCTCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACTTTGCCCAGAAGAAGATAATACCATTCCAAGACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTGTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTAAAGGATGCATCTGGCAGGACTGTTGAGCTGACACTGTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAGCTTCAAGAAATAATTAACTCCGGCCTCTCTCCAGTTTTGGCTGTGAAATCCGGGAAGGTAAGTGATTTCATTGGGAAATCCATTGGAACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCAGAGGCTCAAATCTTGAGAGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGCCAGGAGCAGCCAAGAATGAGATTCGGAAAACAGTGTCTCAGATTAAAGATGAAGGTCTTGGCAGATCTGATAAACCAGATTGGATTACCGTGAAAGCCACAATATCGTTCATCAAAACAGATTCCTTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACCAGATCAGGAAACTCAAAGTGGCTGTGCGACAGGTGCAATCAAGAATTTGAAGATTGCGATTACAGATATCTTCTTCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTAGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTCAGGCTCAAAATTAAAGAAGAGATGTATGGGGATGAACAGAGGGTAAAAAATACGGTAGTCAAGGCAGATAGGGTAAACCATTCTTCCGAAAGCAAATATATGTTGGATTTGCTTTCAAAATTTTCGAGGTAA 1872 41.35 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKIIVVLSLETIILDCEIIGNPKSSAQSEFFAQKAMPSGNLEQPAKVGNGLLSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPEEDNTIPRQQFSFRPISEIESAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRTVELTLWGDFCNKEGQKLQEIINSGLSPVLAVKSGKVSDFIGKSIGTISSTQLFINPDLSEAQILRDWYDGGGKNTTSLSISKEIMPGAAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNHSSESKYMLDLLSKFSR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 464589 468160 + Tan0018126.1 Tan08g0026 759918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0026 623 Pfam OB-fold nucleic acid binding domain 193 263 IPR004365 GO:0003676(InterPro)
Tan08g0026 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Tan08g0026 623 Gene3D - 3 111 IPR012340 -
Tan08g0026 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan08g0026 623 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Tan08g0026 623 PANTHER REPLICATION FACTOR A 1, RFA1 179 600 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Tan08g0026 623 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Tan08g0026 623 FunFam Replication protein A subunit 290 428 - -
Tan08g0026 623 CDD RPA1_DBD_B 312 419 - -
Tan08g0026 623 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan08g0026 623 CDD RPA1_DBD_C 447 620 IPR047192 -
Tan08g0026 623 FunFam Replication protein A subunit 4 111 - -
Tan08g0026 623 FunFam Replication protein A subunit 429 621 - -
Tan08g0026 623 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Tan08g0026 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Tan08g0026 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Tan08g0026 623 Gene3D - 431 622 IPR012340 -
Tan08g0026 623 Gene3D - 177 286 IPR012340 -
Tan08g0026 623 FunFam Replication protein A subunit 177 287 - -
Tan08g0026 623 CDD RPA1_DBD_A 180 283 - -
Tan08g0026 623 Gene3D - 290 430 IPR012340 -
Tan08g0026 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2266 Tan-Chr1:26968061 Tan08g0026 Tan-Chr8:464589 1.60E-200 dispersed
Tan06g1340 Tan-Chr6:16914063 Tan08g0026 Tan-Chr8:464589 2.90E-07 dispersed
Tan08g0026 Tan-Chr8:464589 Tan09g2042 Tan-Chr9:70931421 1.80E-81 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0026 K07466 - csv:101207583 1174.07