Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0036 ATGGATGGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGCTGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGATGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAAGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTCACGATGATAAATGATCTACCCACGATATTTGAGGTCGTGACCGGAAATGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTGTCCAAGGGGTTGGGAAAAGAAGAGGATGATGAGGGACTGGATGAGGAAGACGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGCGATATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCTTCGTGCAGCAATAAGAGAGCACGGCCCTGA 759 47.3 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDAEEFYQQCDPEKENLCLYGFPNEQWDVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGNVKKQGKDKSLVSNNSSNKSKTGSKGRGSESSKLSKGLGKEEDDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 494043 497823 + Tan0014784.1 Tan08g0036 759928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0036 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Tan08g0036 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Tan08g0036 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Tan08g0036 252 SMART PHD_3 198 246 IPR001965 -
Tan08g0036 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Tan08g0036 252 FunFam PHD finger alfin-like protein 191 247 - -
Tan08g0036 252 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g0036 252 MobiDBLite consensus disorder prediction 145 170 - -
Tan08g0036 252 PANTHER CPG BINDING PROTEIN 7 251 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g0036 252 MobiDBLite consensus disorder prediction 145 192 - -
Tan08g0036 252 Pfam PHD-finger 199 245 IPR019787 -
Tan08g0036 252 CDD PHD_AL_plant 198 248 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1497 Tan-Chr1:15242581 Tan08g0036 Tan-Chr8:494043 2.50E-98 dispersed
Tan01g1498 Tan-Chr1:15242581 Tan08g0036 Tan-Chr8:494043 9.60E-98 dispersed
Tan02g1591 Tan-Chr2:73711944 Tan08g0036 Tan-Chr8:494043 2.70E-124 dispersed
Tan02g1592 Tan-Chr2:73711944 Tan08g0036 Tan-Chr8:494043 4.50E-118 dispersed
Tan08g0036 Tan-Chr8:494043 Tan08g2138 Tan-Chr8:73212437 7.80E-84 dispersed
Tan06g0145 Tan-Chr6:1339577 Tan08g0036 Tan-Chr8:494043 4.50E-108 wgd
Tan08g0036 Tan-Chr8:494043 Tan09g1107 Tan-Chr9:63379831 6.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28066 PF12165 Alfin 1.20E-69 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0036 K26274 - rcu:8272513 414.461