Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0048 ATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCTTCTACCTCCTCCCGACGAAGTTTCCTTCGCCTTCCTAACCCAAGGCGGTACTTTCACGGATGGCGATTTGCTTGTGAATAGAGACGGCGTGCGGATTGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCGGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGAAAAGGAAATGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAACCAGTTTTTTGCTCTCAAGGTGATTCAAATGAATGTTGAGGAATCTCGTTGTAGGCTGGTTGCCAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTCTGTTACCAGATATTCTATGACAATGGTGCCATTTTCATCATCTTGGAATACATGGACGGTGGATCGCTCGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAGCCGTATCTTGCAAACATTTGTTACCAGGTGCTCAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCAAGTACGTCTGATCTAGCAAATACTTTTGTTGGCACTTTCGCTTACATGTCTCCTGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTCGAATGTGCAACGGGTCAATTTCCATATACTCCACCGGATAAGGATAAAGGATGGGAAGGCTTTTTTGATGTAATGCTAGCTGTAGTAGATCTAGCATCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTCTGCTCTTTCATTTCTTCATGCTTACAGAAAGATCCGCAGAAGAGAAGCTCAGCACGCGAACTTCTGGTGCATCCTTTCATCAGAAAGTTCGAACACTTTGACGTTGATCTAGCAGCTTACTTCAGAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1062 42.56 MKKDSSMNPNLKLLLPPPDEVSFAFLTQGGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNVEESRCRLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLANICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLANTFVGTFAYMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVDLASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIRKFEHFDVDLAAYFRDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 531752 534936 + Tan0009876.1 Tan08g0048 759940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0048 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan08g0048 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0048 353 FunFam Mitogen-activated protein kinase kinase 6 151 348 - -
Tan08g0048 353 Coils Coil 105 125 - -
Tan08g0048 353 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0048 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0048 353 SUPERFAMILY Protein kinase-like (PK-like) 56 335 IPR011009 -
Tan08g0048 353 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Tan08g0048 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Tan08g0048 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Tan08g0048 353 FunFam Mitogen-activated protein kinase kinase 1 51 149 - -
Tan08g0048 353 CDD PKc_MAPKK_plant_like 68 333 - -
Tan08g0048 353 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0048 Tan-Chr8:531752 Tan08g0109 Tan-Chr8:951011 2.70E-119 dispersed
Tan05g2167 Tan-Chr5:72452973 Tan08g0048 Tan-Chr8:531752 1.50E-63 transposed
Tan08g0445 Tan-Chr8:4250686 Tan08g0048 Tan-Chr8:531752 8.30E-31 transposed
Tan08g0048 Tan-Chr8:531752 Tan09g1114 Tan-Chr9:63452776 3.60E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67903 PF00069 Pkinase 2.00E-70 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0048 K20603 - csv:101206374 652.129