Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0049 ATGATCTCTGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGCGGAAGCCGTCGCGCCGTCAGATGGGCTGTCGAGAATCTCTTGCCAACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCAACCCCAATGGGGGATCGTGTGGCTGTCTCGGAACTTGATGCAGATGTCGTAGCACTTTATGTGCACGATGTGAAAGAGAAATATGAACAAGTTTTTGTGCCTTTTAAGAAGCTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAAATATGCATCTGAATCTGGTATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGTATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTTTGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATTTATAGGAGAAGAGTCATCACAAGAACGGCTAGTACAGCTCCATCTGCTGAAACCGACTCGAGGCAGTGGATGCTTGGTGATACTGATTACTACCGGGGTTCCAGTGCCGTTAGTGAAAAATCTTCCGAAACTTTTTCTTCTTCTTCCTTGTCGATTGTTCATCGAAGGGGTGATAGCCTTGAAGTTACTTCTACTGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCACTGCAGCTAGAATTAGAAAGCACTGTTTCCTTGTATAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGACACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTGAATGCTGCTTTAGAAAGGGAACAAACTTTGAGGAAAGTTGCTGCTGAAGAAAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAAGAGTCCCTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATTCTACGGCTGAAATAGAAGCTGCAACGAATTTTTTTGATGCAGTTAATGTGATTGGCGAAGGAGGATATGGGAAAGTCTACAAATGTAGTCTCGATCATACTCCGGTAGCCATTAAGGTTTTTCAACACGACATATTTGAGAAAAAGGATGAGTTTCTCAGAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACATGTCGTTTTACTGCTTGGAGCCTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCAACGGAATGGAAAAACTCCCATCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATACAAAGCCAGAGCCTATTATTCATAGAGATCTAAAACCAGGTAATATCTTACTAGACAGAAACTACGTAAGCAAAATCTCAGATGTTGGGATGGCTAAGATCATTGGCGATATTGTGCCCGACAATGTCACAGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGATGACCGGGCGGCAGCCACATGGCCTTCTTCTGGCTGTCGAGAATTCCATCGCAAGCGCCTCCCTTGGAGACATTCTAGATAAGTCGATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGACTCGCGCTGAAATGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATAGTAATCAAAATGAAGAAAAAAGTCCTGCCAATCCTCCAAGCCACTACTTTTGCCCAATTCTCCAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGATTTAGTTACGAGTATGTAGCGATTAAAGCGTGGCTCGAGAAATGTGGCATATCACCGGTGACGAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACCACACTTTGCGTTCTGCCATACAAGAGTGGAGATCAAGAGTGACATTTTCATCTTCCTAA 2190 43.47 MISVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLKYASESGIKRLVLGSCFRTCIARKLKGDSVPSAILRTAPSSFDIYVIYRRRVITRTASTAPSAETDSRQWMLGDTDYYRGSSAVSEKSSETFSSSSLSIVHRRGDSLEVTSTEQLNSLSTLTEEEDMRAEVESLQLELESTVSLYKQACEELVHAQKKVQTLTSECLEESRRVNAALEREQTLRKVAAEEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYSTAEIEAATNFFDAVNVIGEGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLREVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILQRNGKTPIPWSTRFRIVFQVASGLAFLHNTKPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLMTGRQPHGLLLAVENSIASASLGDILDKSITDWPLAEAEELARLALKCLKLRCRDRPDLETEVLPVLKRLVDFADSNQNEEKSPANPPSHYFCPILQEIMEDPYIAADGFSYEYVAIKAWLEKCGISPVTKLKLQHSMFIPNHTLRSAIQEWRSRVTFSSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 535292 539008 - Tan0017282.1 Tan08g0049 759941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0049 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g0049 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0049 729 Pfam Protein kinase domain 375 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0049 729 Coils Coil 298 347 - -
Tan08g0049 729 PANTHER OS02G0152300 PROTEIN 4 718 IPR051348 -
Tan08g0049 729 Coils Coil 259 279 - -
Tan08g0049 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 726 IPR013083 -
Tan08g0049 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g0049 729 CDD STK_N 3 161 - -
Tan08g0049 729 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Tan08g0049 729 FunFam Os07g0541700 protein 445 535 - -
Tan08g0049 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0049 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 153 - -
Tan08g0049 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Tan08g0049 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g0049 729 SUPERFAMILY RING/U-box 645 723 - -
Tan08g0049 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Tan08g0049 729 Gene3D Transferase(Phosphotransferase) domain 1 445 654 - -
Tan08g0049 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0049 729 Gene3D HUPs 3 156 IPR014729 -
Tan08g0049 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Tan08g0049 729 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 344 444 - -
Tan08g0049 729 Pfam Universal stress protein family 19 154 IPR006016 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0049 Tan-Chr8:535292 Tan08g0926 Tan-Chr8:13186541 6.70E-104 dispersed
Tan08g0049 Tan-Chr8:535292 Tan08g0050 Tan-Chr8:535292 0.00E+00 tandem
Tan07g0187 Tan-Chr7:4452608 Tan08g0049 Tan-Chr8:535292 1.50E-109 transposed
Tan06g0151 Tan-Chr6:1435251 Tan08g0049 Tan-Chr8:535292 2.90E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67904 PF00069 Pkinase 6.90E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0049 - - - 0.0