Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0050 ATGATCTCTGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGCGGAAGCCGTCGCGCCGTCAGATGGGCTGTCGAGAATCTCTTGCCAACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCAACCCCAATGGGGGATCGTGTGGCTGTCTCGGAACTTGATGCAGATGTCGTAGCACTTTATGTGCACGATGTGAAAGAGAAATATGAACAAGTTTTTGTGCCTTTTAAGAAGCTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAAATATGCATCTGAATCTGGTATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGTATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTTTGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATTTATAGGAGAAGAGTCATCACAAGAACGGCTAGTACAGCTCCATCTGCTGAAACCGACTCGAGGCAGTGGATGCTTGGTGATACTGATTACTACCGGGGTTCCAGTGCCGTTAGTGAAAAATCTTCCGAAACTTTTTCTTCTTCTTCCTTGTCGATTGTTCATCGAAGGGGTGATAGCCTTGAAGTTACTTCTACTGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCACTGCAGCTAGAATTAGAAAGCACTGTTTCCTTGTATAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGACACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTGAATGCTGCTTTAGAAAGGGAACAAACTTTGAGGAAAGTTGCTGCTGAAGAAAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAAGAGTCCCTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATTCTACGGCTGAAATAGAAGCTGCAACGAATTTTTTTGATGCAGTTAATGTGATTGGCGAAGGAGGATATGGGAAAGTCTACAAATGTAGTCTCGATCATACTCCGGTAGCCATTAAGGTTTTTCAACACGACATATTTGAGAAAAAGGATGAGTTTCTCAGAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACATGTCGTTTTACTGCTTGGAGCCTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCAACGGAATGGAAAAACTCCCATCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATACAAAGCCAGAGCCTATTATTCATAGAGATCTAAAACCAGGTAATATCTTACTAGACAGAAACTACGTAAGCAAAATCTCAGATGTTGGGATGGCTAAGATCATTGGCGATATTGTGCCCGACAATGTCACAGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGATGACCGGGCGGCAGCCACATGGCCTTCTTCTGGCTGTCGAGAATTCCATCGCAAGCGCCTCCCTTGGAGACATTCTAGATAAGTCGATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGACTCGCGCTGAAATGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATAGTAATCAAAATGAAGAAAAAAGTCCTGCCAATCCTCCAAGCCACTACTTTTGCCCAATTCTCCAGGTGAATTCAAAACACACATACACAATCATCAGTTCTTCATGA 2037 43.35 MISVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLKYASESGIKRLVLGSCFRTCIARKLKGDSVPSAILRTAPSSFDIYVIYRRRVITRTASTAPSAETDSRQWMLGDTDYYRGSSAVSEKSSETFSSSSLSIVHRRGDSLEVTSTEQLNSLSTLTEEEDMRAEVESLQLELESTVSLYKQACEELVHAQKKVQTLTSECLEESRRVNAALEREQTLRKVAAEEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYSTAEIEAATNFFDAVNVIGEGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLREVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILQRNGKTPIPWSTRFRIVFQVASGLAFLHNTKPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLMTGRQPHGLLLAVENSIASASLGDILDKSITDWPLAEAEELARLALKCLKLRCRDRPDLETEVLPVLKRLVDFADSNQNEEKSPANPPSHYFCPILQVNSKHTYTIISSS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 535292 539008 - Tan0017282.2 Tan08g0050 759942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0050 678 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 Gene3D HUPs 3 156 IPR014729 -
Tan08g0050 678 FunFam Os07g0541700 protein 445 535 - -
Tan08g0050 678 Coils Coil 298 347 - -
Tan08g0050 678 Coils Coil 259 279 - -
Tan08g0050 678 Gene3D Phosphorylase Kinase; domain 1 350 444 - -
Tan08g0050 678 Pfam Universal stress protein family 19 154 IPR006016 -
Tan08g0050 678 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 153 - -
Tan08g0050 678 CDD STK_N 3 161 - -
Tan08g0050 678 Pfam Protein kinase domain 375 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Tan08g0050 678 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Tan08g0050 678 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 344 444 - -
Tan08g0050 678 PANTHER OS02G0152300 PROTEIN 4 667 IPR051348 -
Tan08g0050 678 Gene3D Transferase(Phosphotransferase) domain 1 445 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0187 Tan-Chr7:4452608 Tan08g0050 Tan-Chr8:535292 2.70E-90 dispersed
Tan08g0050 Tan-Chr8:535292 Tan08g0926 Tan-Chr8:13186541 6.30E-104 dispersed
Tan08g0049 Tan-Chr8:535292 Tan08g0050 Tan-Chr8:535292 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67905 PF00069 Pkinase 6.00E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0050 - - - 0.0