Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0050 ATGATCTCTGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGCGGAAGCCGTCGCGCCGTCAGATGGGCTGTCGAGAATCTCTTGCCAACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCAACCCCAATGGGGGATCGTGTGGCTGTCTCGGAACTTGATGCAGATGTCGTAGCACTTTATGTGCACGATGTGAAAGAGAAATATGAACAAGTTTTTGTGCCTTTTAAGAAGCTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAAATATGCATCTGAATCTGGTATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGTATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTTTGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATTTATAGGAGAAGAGTCATCACAAGAACGGCTAGTACAGCTCCATCTGCTGAAACCGACTCGAGGCAGTGGATGCTTGGTGATACTGATTACTACCGGGGTTCCAGTGCCGTTAGTGAAAAATCTTCCGAAACTTTTTCTTCTTCTTCCTTGTCGATTGTTCATCGAAGGGGTGATAGCCTTGAAGTTACTTCTACTGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCACTGCAGCTAGAATTAGAAAGCACTGTTTCCTTGTATAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGACACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTGAATGCTGCTTTAGAAAGGGAACAAACTTTGAGGAAAGTTGCTGCTGAAGAAAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAAGAGTCCCTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATTCTACGGCTGAAATAGAAGCTGCAACGAATTTTTTTGATGCAGTTAATGTGATTGGCGAAGGAGGATATGGGAAAGTCTACAAATGTAGTCTCGATCATACTCCGGTAGCCATTAAGGTTTTTCAACACGACATATTTGAGAAAAAGGATGAGTTTCTCAGAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACATGTCGTTTTACTGCTTGGAGCCTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCAACGGAATGGAAAAACTCCCATCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATACAAAGCCAGAGCCTATTATTCATAGAGATCTAAAACCAGGTAATATCTTACTAGACAGAAACTACGTAAGCAAAATCTCAGATGTTGGGATGGCTAAGATCATTGGCGATATTGTGCCCGACAATGTCACAGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGATGACCGGGCGGCAGCCACATGGCCTTCTTCTGGCTGTCGAGAATTCCATCGCAAGCGCCTCCCTTGGAGACATTCTAGATAAGTCGATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGACTCGCGCTGAAATGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATAGTAATCAAAATGAAGAAAAAAGTCCTGCCAATCCTCCAAGCCACTACTTTTGCCCAATTCTCCAGGTGAATTCAAAACACACATACACAATCATCAGTTCTTCATGA 2037 43.35 MISVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLKYASESGIKRLVLGSCFRTCIARKLKGDSVPSAILRTAPSSFDIYVIYRRRVITRTASTAPSAETDSRQWMLGDTDYYRGSSAVSEKSSETFSSSSLSIVHRRGDSLEVTSTEQLNSLSTLTEEEDMRAEVESLQLELESTVSLYKQACEELVHAQKKVQTLTSECLEESRRVNAALEREQTLRKVAAEEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYSTAEIEAATNFFDAVNVIGEGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLREVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILQRNGKTPIPWSTRFRIVFQVASGLAFLHNTKPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLMTGRQPHGLLLAVENSIASASLGDILDKSITDWPLAEAEELARLALKCLKLRCRDRPDLETEVLPVLKRLVDFADSNQNEEKSPANPPSHYFCPILQVNSKHTYTIISSS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 535292 539008 - Tan0017282.2 Tan08g0050 759942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0050 678 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 Gene3D HUPs 3 156 IPR014729 -
Tan08g0050 678 FunFam Os07g0541700 protein 445 535 - -
Tan08g0050 678 Coils Coil 298 347 - -
Tan08g0050 678 Coils Coil 259 279 - -
Tan08g0050 678 Gene3D Phosphorylase Kinase; domain 1 350 444 - -
Tan08g0050 678 Pfam Universal stress protein family 19 154 IPR006016 -
Tan08g0050 678 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 153 - -
Tan08g0050 678 CDD STK_N 3 161 - -
Tan08g0050 678 Pfam Protein kinase domain 375 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Tan08g0050 678 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Tan08g0050 678 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0050 678 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 344 444 - -
Tan08g0050 678 PANTHER OS02G0152300 PROTEIN 4 667 IPR051348 -
Tan08g0050 678 Gene3D Transferase(Phosphotransferase) domain 1 445 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0050 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0187 Tan-Chr7:4452608 Tan08g0050 Tan-Chr8:535292 2.70E-90 dispersed
Tan08g0050 Tan-Chr8:535292 Tan08g0926 Tan-Chr8:13186541 6.30E-104 dispersed
Tan08g0049 Tan-Chr8:535292 Tan08g0050 Tan-Chr8:535292 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0049 . 3 723 Plant U-box Gene Family AT5G57035 54.4 4.7e-228 788.5
Tan08g0050 . 3 665 Plant U-box Gene Family AT5G57035 53.1 4.3e-205 712.2
Tan04g1425 . 201 433 Plant U-box Gene Family AT5G05230 58.8 8.6e-68 255.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67905 PF00069 Pkinase 6.00E-42 CL0016 Tan PK