Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g0088 | ATGATGATCGGCGAGCAACCCAATCGTCCTAATCCGACGCTTCACGTTCCTCCGTGGACGTTTATGGAGGATCCGGCGTCGGATGTGTACAGTCATTCGCCGGGGAGCAGCGGCAGCGGTGGCGGTGTCAAGTGCGACGGATGTTCCAGTGGAGGTGGATACTCTCCTTTTTATCTTCACGAAGCATTGGCGATGCTGCAGCGGTACATGCCATTGAAAGAGGCGGAGGTGGAGTCGGATTTTGATGTTTCAGGTCGGGAGCCGGATTCTCCGGTGGATACGTACTCCTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGCGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGAAGGTATTACTATTCCGGTACGGCGTGTGCGGATTTTCGGAAGGGGAGCTGTAAGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGATGGGACAAGTTGCCGAAGGAGAGTTTGCTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTCTGCCTCAGCAGAGTCCTCGGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTTCGGCAAGCAATGGAAGCCTGCGCGAAACAAATGCCCTATTTATCTTCTCCAGGAACATCGCCACCGGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAATCACTAAATCGACCACACGCAACAAGTTCGATCAACGAAATGGTAGCGTCACTGCGAAGTTTACAGCTCAACAAGGAACTCGGTAAGGTGCAATCTCCTTCTTCCTCATGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCATCGCCCGATCCGGTTTCTGTAGCCTTCCAGATACTCCGACTCGTCCAGCCATCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAGCCGGCGATGGAGCGAGTGGAGTCCGGGAGAAATCTACGGGCAAAAATGCTGGAGAAACTAAGGAAGGAGAACTCTGTCGGCTGCGGCGATCAGGATAAACACGGCGGCGGAACCAGCGGCGGCGGTATGGACGTCGGTTGGGTCTCGGAGCTGCTTAAGTAA | 1188 | 54.04 | MMIGEQPNRPNPTLHVPPWTFMEDPASDVYSHSPGSSGSGGGVKCDGCSSGGGYSPFYLHEALAMLQRYMPLKEAEVESDFDVSGREPDSPVDTYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAMEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELGKVQSPSSSWNVQVGSPVFGSPKESIARSGFCSLPDTPTRPAIRYLDFWDLGCGEEPAMERVESGRNLRAKMLEKLRKENSVGCGDQDKHGGGTSGGGMDVGWVSELLK | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 805672 | 807678 | - | Tan0012236.1 | Tan08g0088 | 759980 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g0088 | 395 | MobiDBLite | consensus disorder prediction | 365 | 390 | - | - | |
| Tan08g0088 | 395 | Gene3D | - | 140 | 203 | - | - | |
| Tan08g0088 | 395 | FunFam | Zinc finger CCCH domain-containing protein 66 | 97 | 165 | - | - | |
| Tan08g0088 | 395 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872(InterPro) | |
| Tan08g0088 | 395 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872(InterPro) | |
| Tan08g0088 | 395 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Tan08g0088 | 395 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 143 | 164 | IPR000571 | GO:0046872(InterPro) | |
| Tan08g0088 | 395 | PANTHER | UNKEMPT FAMILY MEMBER | 59 | 395 | IPR045234 | - | |
| Tan08g0088 | 395 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g4650 | Tan-Chr1:112358561 | Tan08g0088 | Tan-Chr8:805672 | 3.20E-91 | dispersed | |
| Tan02g0199 | Tan-Chr2:1713933 | Tan08g0088 | Tan-Chr8:805672 | 2.50E-57 | dispersed | |
| Tan08g0088 | Tan-Chr8:805672 | Tan08g1420 | Tan-Chr8:58019450 | 1.50E-52 | dispersed | |
| Tan08g0088 | Tan-Chr8:805672 | Tan09g1181 | Tan-Chr9:64142276 | 5.40E-132 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28070 | PF00642 | zf-CCCH | 1.00E-05 | CL0537 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g0088 | - | - | - | 0.0 |