Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0107 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGGTCACTGGCGTCATGAAGGATTTTGATGAACCAGGGTTTCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGTGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.75 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEVTGVMKDFDEPGFLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 941553 943312 + Tan0016487.1 Tan08g0107 759999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0107 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Tan08g0107 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Tan08g0107 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Tan08g0107 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Tan08g0107 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Tan08g0107 133 FunFam Profilin 1 133 - -
Tan08g0107 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2694 Tan-Chr4:86441745 Tan08g0107 Tan-Chr8:941553 1.30E-58 dispersed
Tan06g0232 Tan-Chr6:1910731 Tan08g0107 Tan-Chr8:941553 5.10E-63 dispersed
Tan08g0107 Tan-Chr8:941553 Tan08g0108 Tan-Chr8:944944 1.70E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0107 K05759 - csv:101219322 257.299