Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tan08g0107	ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGGTCACTGGCGTCATGAAGGATTTTGATGAACCAGGGTTTCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGTGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG	402	50.75	MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEVTGVMKDFDEPGFLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL	133

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	941553	943312	+	Tan0016487.1	Tan08g0107	759999

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tan08g0107	133	PRINTS	Plant profilin signature	29	42	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	54	68	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	73	82	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	119	132	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	106	119	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	1	14	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Plant profilin signature	86	101	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PANTHER	PROFILIN	1	132	IPR005455	GO:0003779(InterPro)\|GO:0003785(PANTHER)\|GO:0005938(PANTHER)\|GO:0042989(PANTHER)
Tan08g0107	133	Gene3D	Dynein light chain 2a, cytoplasmic	1	133	-	-
Tan08g0107	133	PRINTS	Profilin signature	66	80	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Profilin signature	3	12	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Profilin signature	42	62	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Profilin signature	102	115	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Profilin signature	115	132	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	PRINTS	Profilin signature	23	32	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	ProSitePatterns	Profilin signature.	1	8	IPR027310	GO:0003779(InterPro)
Tan08g0107	133	SMART	prof_2	1	133	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	CDD	PROF	2	132	IPR005455	GO:0003779(InterPro)
Tan08g0107	133	SUPERFAMILY	Profilin (actin-binding protein)	2	132	IPR036140	-
Tan08g0107	133	FunFam	Profilin	1	133	-	-
Tan08g0107	133	Pfam	Profilin	1	132	IPR048278	GO:0003779(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tan08g0107	K05759	-	-	csv:101219322	257.299

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Tan04g2694	Tan-Chr4:86441745	Tan08g0107	Tan-Chr8:941553	1.30E-58	dispersed
Tan06g0232	Tan-Chr6:1910731	Tan08g0107	Tan-Chr8:941553	5.10E-63	dispersed
Tan08g0107	Tan-Chr8:941553	Tan08g0108	Tan-Chr8:944944	1.70E-61	tandem

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi11g251	.	.	.	.	Bpe01g00568	Bpe02g02225	.	Bma11g00549	.	.	.	.	Car05g01289	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone4ag0756	.	.	Csa02g00079	Chy05g01410	.	Blo08g00324	.	Bda02g00405	.	Bpe08g00505	.	.	.	Sed11g0035	Cmo05g01378	.	.	.	.	.	Cpe11g01145	.	Bhi06g01686	Tan08g0107	Cmetu05g1788	.	Hepe08g2631	.	.	.	.	.	.	.	.	.	Lsi11g00216	.	.	Cme05g02014

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.8	1.1e-214	743.0
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.6	1.1e-214	743.0
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.6	3.2e-214	741.5
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	3.5e-213	738.0
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	3.5e-213	738.0
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.0e-212	734.9
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.0e-212	734.9
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.8	3.0e-212	734.9
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT2G37620	94.4	3.9e-212	734.6
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT2G37620	96.1	1.2e-200	696.4
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	5.4e-214	740.7
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	5.4e-214	740.7
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	5.4e-214	740.7
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	9.2e-214	740.0
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.8	2.7e-213	738.4
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	7.8e-213	736.9
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	1.0e-212	736.5
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.2	9.5e-211	729.9
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	4.7e-210	727.6
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT5G59370	96.1	8.4e-199	690.3
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	2.4e-214	741.9
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	2.4e-214	741.9
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	2.4e-214	741.9
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	4.1e-214	741.1
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.1	1.2e-213	739.6
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	4.6e-213	737.6
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.3	2.3e-212	735.3
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.4	4.3e-211	731.1
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	2.1e-210	728.8
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT3G46520	95.8	2.4e-198	688.7
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT3G12110	97.3	2.2e-215	745.3
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.8	1.4e-214	742.7
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.6	4.1e-214	741.1
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.6	5.4e-214	740.7
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	4.6e-213	737.6
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	4.6e-213	737.6
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.0	4.6e-213	737.6
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	1.3e-212	736.1
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.2	3.0e-212	734.9
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT3G12110	96.1	4.4e-200	694.5
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	6.8e-209	723.8
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	6.8e-209	723.8
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	6.8e-209	723.8
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	6.8e-209	723.8
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	1.5e-208	722.6
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	2.6e-208	721.8
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	7.5e-208	720.3
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	7.5e-208	720.3
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	1.3e-207	719.5
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT3G18780	92.2	7.3e-195	677.2
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	2.3e-209	725.3
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	2.3e-209	725.3
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	2.3e-209	725.3
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	2.3e-209	725.3
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.8	5.2e-209	724.2
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	2.6e-208	721.8
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	4.4e-208	721.1
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	5.8e-208	720.7
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	1.7e-207	719.2
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT1G49240	91.9	1.6e-194	676.0
Tan07g0882	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan07g0883	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan07g0884	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan07g0885	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan03g1336	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan03g1337	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	1.2e-216	749.6
Tan02g1292	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	3.2e-214	741.5
Tan03g0957	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.3	2.7e-213	738.4
Tan05g0383	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	2.7e-213	738.4
Tan08g1503	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.3	2.7e-213	738.4
Tan04g0301	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	1.0e-212	736.5
Tan11g0716	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.5	8.6e-212	733.4
Tan11g0717	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.5	8.6e-212	733.4
Tan11g0718	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.5	8.6e-212	733.4
Tan05g0384	.	1	357	Cytoskeleton Gene Families	AT5G09810	96.1	4.4e-200	694.5
Tan08g0107	.	1	133	Cytoskeleton Gene Families	AT2G19760	76.7	1.5e-57	219.5
Tan08g0108	.	1	131	Cytoskeleton Gene Families	AT2G19760	76.3	4.2e-57	218.0
Tan06g0232	.	1	131	Cytoskeleton Gene Families	AT2G19760	74.0	6.1e-56	214.2
Tan04g2694	.	1	131	Cytoskeleton Gene Families	AT2G19760	73.3	1.2e-54	209.9
Tan08g0108	.	1	131	Cytoskeleton Gene Families	AT4G29350	77.9	1.5e-57	219.5
Tan06g0232	.	1	131	Cytoskeleton Gene Families	AT4G29350	74.8	6.1e-56	214.2
Tan08g0107	.	1	133	Cytoskeleton Gene Families	AT4G29350	73.7	8.9e-55	210.3
Tan04g2694	.	1	131	Cytoskeleton Gene Families	AT4G29350	70.2	1.4e-52	203.0
Tan08g0107	.	1	133	Cytoskeleton Gene Families	AT4G29340	83.6	1.8e-63	239.2
Tan06g0232	.	1	131	Cytoskeleton Gene Families	AT4G29340	76.1	3.9e-58	221.5
Tan08g0108	.	1	131	Cytoskeleton Gene Families	AT4G29340	71.6	6.3e-56	214.2
Tan04g2694	.	1	131	Cytoskeleton Gene Families	AT4G29340	71.6	3.4e-54	208.4

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000501	4	6	1	4	4	2	6	4	2	3	2	1	3	3	3	6	2	7	7	3	3	3	2	4	5	5	3	6	4	4	112