Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g0107 | ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGGTCACTGGCGTCATGAAGGATTTTGATGAACCAGGGTTTCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGTGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG | 402 | 50.75 | MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEVTGVMKDFDEPGFLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL | 133 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 941553 | 943312 | + | Tan0016487.1 | Tan08g0107 | 759999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 29 | 42 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 54 | 68 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 73 | 82 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 119 | 132 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 106 | 119 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Plant profilin signature | 86 | 101 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PANTHER | PROFILIN | 1 | 132 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
Tan08g0107 | 133 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 133 | - | - | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 66 | 80 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 42 | 62 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 102 | 115 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 115 | 132 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | PRINTS | Profilin signature | 23 | 32 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | SMART | prof_2 | 1 | 133 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | CDD | PROF | 2 | 132 | IPR005455 | GO:0003779(InterPro) | |
Tan08g0107 | 133 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 132 | IPR036140 | - | |
Tan08g0107 | 133 | FunFam | Profilin | 1 | 133 | - | - | |
Tan08g0107 | 133 | Pfam | Profilin | 1 | 132 | IPR048278 | GO:0003779(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2694 | Tan-Chr4:86441745 | Tan08g0107 | Tan-Chr8:941553 | 1.30E-58 | dispersed | |
Tan06g0232 | Tan-Chr6:1910731 | Tan08g0107 | Tan-Chr8:941553 | 5.10E-63 | dispersed | |
Tan08g0107 | Tan-Chr8:941553 | Tan08g0108 | Tan-Chr8:944944 | 1.70E-61 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g0107 | K05759 | - | csv:101219322 | 257.299 |