Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0108 ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGGAATCACCTCACATCTGCGGCCGTTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGAAGCTTTCCCTCAGTTCAAGCCTGAAGAAATTGTTGGCATCATGAATGACTTCAATGAACCCGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAGGACTGGTATGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCATCGACCAGGGTCTCTAA 396 48.99 MSWQVYVDDHLMCEIEGNHLTSAAVIGHDGSVWAQSEAFPQFKPEEIVGIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKRTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 944944 947058 + Tan0010693.1 Tan08g0108 760000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0108 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Tan08g0108 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Tan08g0108 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Tan08g0108 131 FunFam Profilin 1 131 - -
Tan08g0108 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Tan08g0108 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Tan08g0108 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Tan08g0108 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3908 Tan-Chr1:104045473 Tan08g0108 Tan-Chr8:944944 1.30E-22 dispersed
Tan08g0107 Tan-Chr8:941553 Tan08g0108 Tan-Chr8:944944 1.70E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0108 K05759 - cit:102628130 254.603