Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0109 ATGAAGACCAAGACGCCATTGAAGCAACTCAAGCTCTCTGTTCCTGCTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGCGGAACATTTCACGACGGCAATCTCCTATTGAACCAGAAAGGATTGCGGCTTATATCCGAAGAGAAAGAAACGCAGACTTCAGACTGTAAGGAGGTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGCAAACAGATAGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCACTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAACCATCCAATCTACTTGTGAACCACAAAGGAGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTCTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAACAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCCGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTTGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 42.07 MKTKTPLKQLKLSVPAQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKETQTSDCKEVDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 951011 954250 + Tan0004959.1 Tan08g0109 760001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0109 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Tan08g0109 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Tan08g0109 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Tan08g0109 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Tan08g0109 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Tan08g0109 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan08g0109 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Tan08g0109 354 CDD PKc_MAPKK_plant_like 67 333 - -
Tan08g0109 354 PIRSF ILK 2 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0109 K04368 - - csv:101218848 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1394 Tan-Chr7:64829880 Tan08g0109 Tan-Chr8:951011 1.20E-65 dispersed
Tan08g0048 Tan-Chr8:531752 Tan08g0109 Tan-Chr8:951011 2.70E-119 dispersed
Tan08g0109 Tan-Chr8:951011 Tan04g2362 Tan-Chr4:82123935 6.30E-31 dispersed
Tan08g0109 Tan-Chr8:951011 Tan09g1114 Tan-Chr9:63452776 1.60E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1114 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 1.6e-135 479.9
Tan08g0048 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.9 5.0e-126 448.4
Tan08g0109 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 3.6e-108 389.0
Tan09g1114 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.9 7.6e-135 477.6
Tan08g0048 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 64.3 1.7e-118 423.3
Tan08g0109 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.2e-110 396.4
Tan07g1394 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.7 3.5e-229 791.6
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.0e-129 459.1
Tan05g2167 . 47 310 MAP Kinase Kinase Gene Family AT1G51660 55.7 9.6e-83 304.7
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.8 4.9e-129 458.4
Tan05g2167 . 41 312 MAP Kinase Kinase Gene Family AT3G21220 54.8 9.7e-85 311.2
Tan08g0109 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Tan09g1114 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 1.2e-119 427.2
Tan08g0048 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 1.9e-107 386.7
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 63.0 1.9e-108 389.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.9e-76 283.5
Tan05g2167 . 1 298 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.1e-81 300.8
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.8e-114 409.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G73500 52.8 3.0e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67907 PF00069 Pkinase 2.20E-66 CL0016 Tan PK