Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0109 ATGAAGACCAAGACGCCATTGAAGCAACTCAAGCTCTCTGTTCCTGCTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGCGGAACATTTCACGACGGCAATCTCCTATTGAACCAGAAAGGATTGCGGCTTATATCCGAAGAGAAAGAAACGCAGACTTCAGACTGTAAGGAGGTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGCAAACAGATAGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCACTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAACCATCCAATCTACTTGTGAACCACAAAGGAGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTCTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAACAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCCGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTTGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 42.07 MKTKTPLKQLKLSVPAQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKETQTSDCKEVDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 951011 954250 + Tan0004959.1 Tan08g0109 760001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0109 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Tan08g0109 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Tan08g0109 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Tan08g0109 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Tan08g0109 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g0109 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Tan08g0109 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan08g0109 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Tan08g0109 354 CDD PKc_MAPKK_plant_like 67 333 - -
Tan08g0109 354 PIRSF ILK 2 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1394 Tan-Chr7:64829880 Tan08g0109 Tan-Chr8:951011 1.20E-65 dispersed
Tan08g0048 Tan-Chr8:531752 Tan08g0109 Tan-Chr8:951011 2.70E-119 dispersed
Tan08g0109 Tan-Chr8:951011 Tan04g2362 Tan-Chr4:82123935 6.30E-31 dispersed
Tan08g0109 Tan-Chr8:951011 Tan09g1114 Tan-Chr9:63452776 1.60E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67907 PF00069 Pkinase 2.20E-66 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0109 K04368 - csv:101218848 680.633