Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0138 ATGGCCGACGCCACCGTGCCGGACACCGACTCGGGCGGTGCCAATTCTTCGTCGCCATCGTCGTCGTCGTCATCGTCCTCCCCCTCGTCTCCGCCAAAACAAGGTGGCAGCAGGTTGAAGCGCGGACGCGAAATTAGCAGCAACAACAGCAACAACAACAGTCGACACCCAATTTACCGCGGCGTCCGAATGAGGGCGTGGGGTAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAAAAGAGTCGGATCTGGCTCGGTACCTTCGCCACGCCCGAAATGGCAGCGCGTGCTCACGACGTTGCTGCCCTTACCATCAAAGGCAACTCCGCCATCCTCAATTTCCCCGAACTCGCTGCCTCATTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTGCAATCCGCTGCTGCCCTTGCCGCCTCAATGCAACTCCCTAATGTCCCTCCTTCGCCACCACCGTCGGTGCGAACTTCAACACCATCGTCTCCGCTACTGTCGCCGCCGTTTTCATCGTCGTCTGAGTTGGACGAGTCGACGCCGGAGGAACTGTGTGAAATCGTGGAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGCCGAGTCGGTGACCGAGTTTGTGTGTGATGAGTGGCTGTATAGTTATGGGCCATGGTATCAAAATCAAAGTAGAAGGGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGAGTGTGTGATTCCCGCTGCATTTCAACCTTTACCTTTCTCGTGGTAA 780 56.54 MADATVPDTDSGGANSSSPSSSSSSSSPSSPPKQGGSRLKRGREISSNNSNNNSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNVPPSPPPSVRTSTPSSPLLSPPFSSSSELDESTPEELCEIVELPSLGTSYEESAESVTEFVCDEWLYSYGPWYQNQSRREEEEEAYEYFRDQMAMAETECVIPAAFQPLPFSW 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1200833 1201989 - Tan0003212.1 Tan08g0138 760030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0138 259 MobiDBLite consensus disorder prediction 143 181 - -
Tan08g0138 259 MobiDBLite consensus disorder prediction 9 34 - -
Tan08g0138 259 SMART rav1_2 58 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 CDD AP2 57 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 MobiDBLite consensus disorder prediction 159 177 - -
Tan08g0138 259 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677(InterPro)
Tan08g0138 259 Coils Coil 225 245 - -
Tan08g0138 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 206 IPR051032 -
Tan08g0138 259 MobiDBLite consensus disorder prediction 41 57 - -
Tan08g0138 259 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Tan08g0138 259 Pfam AP2 domain 58 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g0138 259 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2062 Tan-Chr1:23587414 Tan08g0138 Tan-Chr8:1200833 5.20E-36 dispersed
Tan04g2681 Tan-Chr4:86246156 Tan08g0138 Tan-Chr8:1200833 1.40E-35 dispersed
Tan08g0138 Tan-Chr8:1200833 Tan10g0052 Tan-Chr10:874216 6.60E-30 dispersed
Tan08g0138 Tan-Chr8:1200833 Tan09g1224 Tan-Chr9:64693612 3.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28075 PF00847 AP2 1.70E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0138 K09286 - csv:101212945 320.472